Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACLV7H_RS08680 Genome accession   NZ_OZ217340
Coordinates   1701206..1702357 (-) Length   383 a.a.
NCBI ID   WP_411866943.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1696206..1707357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS08650 (SORA22_17410) - 1696475..1696936 (-) 462 WP_084945089.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLV7H_RS08655 (SORA22_17420) - 1697109..1697813 (+) 705 WP_411866941.1 CD20-like domain-containing protein -
  ACLV7H_RS08660 (SORA22_17430) - 1697862..1698578 (-) 717 WP_045593032.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLV7H_RS08665 (SORA22_17440) - 1698681..1700045 (-) 1365 WP_411866942.1 MATE family efflux transporter -
  ACLV7H_RS08670 (SORA22_17450) - 1700155..1700709 (+) 555 WP_000060281.1 GNAT family N-acetyltransferase -
  ACLV7H_RS08675 (SORA22_17460) - 1700842..1701036 (-) 195 WP_000415531.1 PspC domain-containing protein -
  ACLV7H_RS08680 (SORA22_17470) recA 1701206..1702357 (-) 1152 WP_411866943.1 recombinase RecA Machinery gene
  ACLV7H_RS08685 (SORA22_17480) cinA 1702412..1703668 (-) 1257 WP_411866944.1 competence/damage-inducible protein A Machinery gene
  ACLV7H_RS08690 (SORA22_17490) brpA 1703741..1704781 (-) 1041 WP_411866945.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV7H_RS08695 (SORA22_17500) - 1704786..1705307 (-) 522 WP_411866946.1 N-acetyltransferase family protein -
  ACLV7H_RS08700 (SORA22_17510) tsaE 1705297..1705740 (-) 444 WP_411866947.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV7H_RS08705 (SORA22_17520) comM 1705824..1706447 (-) 624 WP_045593016.1 hypothetical protein Regulator
  ACLV7H_RS08710 (SORA22_17530) ndk 1706582..1707001 (-) 420 WP_411867081.1 nucleoside-diphosphate kinase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 40950.61 Da        Isoelectric Point: 4.8797

>NTDB_id=1169982 ACLV7H_RS08680 WP_411866943.1 1701206..1702357(-) (recA) [Streptococcus oralis isolate S. oralis A22]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGSTPTSVAEDLAPNQEVTLDLGDGLEIEIED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1169982 ACLV7H_RS08680 WP_411866943.1 1701206..1702357(-) (recA) [Streptococcus oralis isolate S. oralis A22]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGGGCTGATCGTGAAAAAGCATTGAACGATGC
TCTTAAATTGATTGAGAAAGACTTTGGTAAAGGCTCAATCATGCGTTTGGGTGAGCGCGCGGAGCAAAAAGTTCAAGTGA
TGAGCTCAGGCTCATTGGCTCTGGACATTGCTCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATTTATGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCGGTTGCGCAAGCGCAGAAGGAAGGAGGTATCGCTGCCTTTAT
CGATGCGGAGCATGCCCTTGATCCAGCCTACGCTGCAGCCCTTGGTGTGAACATCGACGAGCTGCTCTTGTCACAACCAG
ACTCAGGAGAGCAAGGTCTTGAAATTGCAGGGAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCAGTT
GCGGCCCTTGTACCTCGTGCAGAAATCGATGGGGACATTGGAGACAGCCATGTTGGTTTGCAAGCTCGTATGATGAGCCA
AGCCATGCGTAAACTTGGTGCTTCTATCAATAAAACTAAAACAATTGCCATCTTTATCAATCAATTGCGTGAAAAAGTTG
GGGTCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAAGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAGACCAAGATCAAGGTCGTGAAAAA
CAAGGTGGCTCCACCCTTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTCTTGA
AGATCGCAAGTGATCTCGATATTATCCAAAAAGCAGGAGCATGGTACTCTTACAAGGGTGAAAAAATCGGACAAGGATCT
GAAAATGCTAAGAAATACTTGGCGGATCACCCAGAGATTTTTGATGCTATTGATCATCAAGTTCGTGTTCAATATGGCTT
GATTGAAGATGAAGAAGGGTCAACTCCTACCTCTGTCGCAGAAGATTTAGCACCTAACCAAGAAGTAACGCTTGACCTAG
GTGACGGACTTGAAATCGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

92.987

100

0.935

  recA Streptococcus mitis SK321

92.727

100

0.932

  recA Streptococcus pneumoniae R6

89.974

100

0.914

  recA Streptococcus pneumoniae TIGR4

89.974

100

0.914

  recA Streptococcus pneumoniae D39

89.974

100

0.914

  recA Streptococcus pneumoniae Rx1

89.974

100

0.914

  recA Streptococcus pyogenes NZ131

85.263

99.217

0.846

  recA Streptococcus mutans UA159

84.595

100

0.846

  recA Lactococcus lactis subsp. cremoris KW2

77.904

92.167

0.718

  recA Latilactobacillus sakei subsp. sakei 23K

67.246

90.078

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.162

0.595

  recA Acinetobacter baumannii D1279779

60.234

89.295

0.538

  recA Glaesserella parasuis strain SC1401

60

88.773

0.533

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.334

0.53

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.64

0.527

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae strain FA1090

60.909

86.162

0.525

  recA Vibrio cholerae strain A1552

61.728

84.595

0.522

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

84.595

0.522

  recA Acinetobacter baylyi ADP1

61.043

85.117

0.52

  recA Pseudomonas stutzeri DSM 10701

57.225

90.339

0.517

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.725

89.295

0.507

  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493

  recA Helicobacter pylori strain NCTC11637

57.143

85.901

0.491

  recA Helicobacter pylori 26695

57.143

85.901

0.491


Multiple sequence alignment