Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLV7H_RS08685 Genome accession   NZ_OZ217340
Coordinates   1702412..1703668 (-) Length   418 a.a.
NCBI ID   WP_411866944.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697412..1708668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS08660 (SORA22_17430) - 1697862..1698578 (-) 717 WP_045593032.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLV7H_RS08665 (SORA22_17440) - 1698681..1700045 (-) 1365 WP_411866942.1 MATE family efflux transporter -
  ACLV7H_RS08670 (SORA22_17450) - 1700155..1700709 (+) 555 WP_000060281.1 GNAT family N-acetyltransferase -
  ACLV7H_RS08675 (SORA22_17460) - 1700842..1701036 (-) 195 WP_000415531.1 PspC domain-containing protein -
  ACLV7H_RS08680 (SORA22_17470) recA 1701206..1702357 (-) 1152 WP_411866943.1 recombinase RecA Machinery gene
  ACLV7H_RS08685 (SORA22_17480) cinA 1702412..1703668 (-) 1257 WP_411866944.1 competence/damage-inducible protein A Machinery gene
  ACLV7H_RS08690 (SORA22_17490) brpA 1703741..1704781 (-) 1041 WP_411866945.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV7H_RS08695 (SORA22_17500) - 1704786..1705307 (-) 522 WP_411866946.1 N-acetyltransferase family protein -
  ACLV7H_RS08700 (SORA22_17510) tsaE 1705297..1705740 (-) 444 WP_411866947.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV7H_RS08705 (SORA22_17520) comM 1705824..1706447 (-) 624 WP_045593016.1 hypothetical protein Regulator
  ACLV7H_RS08710 (SORA22_17530) ndk 1706582..1707001 (-) 420 WP_411867081.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45372.74 Da        Isoelectric Point: 4.7930

>NTDB_id=1169983 ACLV7H_RS08685 WP_411866944.1 1702412..1703668(-) (cinA) [Streptococcus oralis isolate S. oralis A22]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKDLVFDPQAQEKLDIFFAHRPDYTRTPNNERQAQIIEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQEKADRVLDILENQI
LDRQTFEGISLRDICYGYGEETSLASVVVEELKKRQKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEYGVVSEFTARKMAEQARLKTQSDYGVSLTGVAGPDSLEEHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1169983 ACLV7H_RS08685 WP_411866944.1 1702412..1703668(-) (cinA) [Streptococcus oralis isolate S. oralis A22]
ATGAAAGCAGAAATTATTGCTGTCGGAACAGAAATTTTAACAGGGCAGATTGTCAATACCAATGCTCAGTTTTTATCAGA
GAAACTAGCCGAAATCGGGGTAGACGTCTACTTCCAAACAGCTGTTGGGGATAATGAAGCTCGTCTTTTGTCCTTGCTTG
AGATTGCGAGTCAACGTAGCAATCTTGTGATTTTGACAGGAGGCTTGGGACCAACTGAGGATGATTTGACCAAACAAACT
CTGGCAAAATTTTTAGGAAAAGATCTAGTGTTTGACCCTCAAGCGCAAGAGAAGCTAGATATCTTCTTTGCTCATAGACC
TGACTATACTCGGACACCGAATAATGAGCGCCAAGCCCAAATTATAGAAGGGGCAACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTGTCGGAAGTAGATGGCGTGACCTACGTAGTCCTTCCAGGACCGCCAAGTGAGTTGAAACCCATG
GTCTTAAATCAACTTTTACCCAAGTTAATGACTGGTAGCAAGTTATACTCACGAGTGCTTCGTTTCTTTGGGATTGGTGA
GAGTCAGTTGGTGACCATTTTGGCGGATTTGATTGACCATCAAACAGATCCGACCTTGGCGCCTTATGCCAAGACAGGAG
AAGTGACCTTGCGCTTGTCCACAAAAGCAGTCAGTCAAGAAAAGGCTGATCGAGTGCTGGATATCCTAGAAAATCAAATC
TTGGATCGTCAGACTTTTGAGGGAATTTCTCTGCGAGACATCTGTTATGGATATGGGGAAGAAACCAGCCTAGCAAGTGT
CGTTGTAGAAGAGCTAAAGAAGAGACAGAAAAGCATTACTGCGGCAGAAAGCTTGACGGCAGGTCTCTTTCAGGCTACTT
TAGCAGACTTTTCAGGTGTTTCAGCTATCTTTAATGGCGGTTTTGTTACTTACAGCCTAGAAGAAAAGTCTAAGATGCTG
GATATTTCCGAGCAAGAGCTGAAAGAGTACGGAGTCGTTTCTGAGTTTACGGCTCGAAAAATGGCAGAGCAGGCACGACT
CAAGACTCAGTCTGACTACGGAGTCAGTTTAACGGGTGTGGCAGGACCAGATAGCCTGGAGGAGCATCCAGCTGGCACAG
TTTTTATTGGACTGGCACATGCAAAAGGGACAGAGGTTATCAAGGCTAATATTGCCGGACGGAGTCGTGCAGATGTTCGT
CACATCGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.713

100

0.897
  cinA Streptococcus mitis NCTC 12261

88.756

100

0.888
  cinA Streptococcus pneumoniae TIGR4

88.756

100

0.888
  cinA Streptococcus pneumoniae Rx1

88.756

100

0.888
  cinA Streptococcus pneumoniae R6

88.756

100

0.888
  cinA Streptococcus pneumoniae D39

88.517

100

0.885
  cinA Streptococcus mutans UA159

70.335

100

0.703
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.933

100

0.459

Multiple sequence alignment