Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL01_RS10030 Genome accession   NZ_LS483451
Coordinates   1868454..1869620 (-) Length   388 a.a.
NCBI ID   WP_061459621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863454..1874620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS12050 - 1864837..1864986 (+) 150 WP_001030863.1 hypothetical protein -
  DQL01_RS10010 - 1865128..1865307 (+) 180 WP_061822737.1 hypothetical protein -
  DQL01_RS10015 lytA 1865446..1866402 (-) 957 WP_061459619.1 N-acetylmuramoyl-L-alanine amidase LytA -
  DQL01_RS10020 - 1866778..1868148 (-) 1371 WP_061459620.1 MATE family efflux transporter -
  DQL01_RS10030 recA 1868454..1869620 (-) 1167 WP_061459621.1 recombinase RecA Machinery gene
  DQL01_RS10035 cinA 1869675..1870931 (-) 1257 WP_061459622.1 competence/damage-inducible protein A Machinery gene
  DQL01_RS10040 brpA 1871015..1872031 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL01_RS10045 - 1872039..1872557 (-) 519 WP_000455530.1 GNAT family N-acetyltransferase -
  DQL01_RS10050 tsaE 1872547..1872990 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL01_RS10060 comM 1873181..1873801 (-) 621 WP_111702721.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41921.72 Da        Isoelectric Point: 4.8403

>NTDB_id=1142081 DQL01_RS10030 WP_061459621.1 1868454..1869620(-) (recA) [Streptococcus pneumoniae strain 4041STDY6836166]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1142081 DQL01_RS10030 WP_061459621.1 1868454..1869620(-) (recA) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCTGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAAATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTGCGTTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGCTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.742

100

0.997
  recA Streptococcus pneumoniae D39

99.742

100

0.997
  recA Streptococcus pneumoniae R6

99.742

100

0.997
  recA Streptococcus pneumoniae TIGR4

99.742

100

0.997
  recA Streptococcus mitis NCTC 12261

94.072

100

0.941
  recA Streptococcus mitis SK321

93.814

100

0.938
  recA Streptococcus mutans UA159

83.204

99.742

0.83
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.125

90.722

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

67.63

89.175

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Glaesserella parasuis strain SC1401

60.641

88.402

0.536
  recA Neisseria gonorrhoeae MS11

59.706

87.629

0.523
  recA Neisseria gonorrhoeae strain FA1090

59.706

87.629

0.523
  recA Neisseria gonorrhoeae MS11

59.706

87.629

0.523
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment