Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   DQL01_RS10060 Genome accession   NZ_LS483451
Coordinates   1873181..1873801 (-) Length   206 a.a.
NCBI ID   WP_111702721.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868181..1878801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS10030 recA 1868454..1869620 (-) 1167 WP_061459621.1 recombinase RecA Machinery gene
  DQL01_RS10035 cinA 1869675..1870931 (-) 1257 WP_061459622.1 competence/damage-inducible protein A Machinery gene
  DQL01_RS10040 brpA 1871015..1872031 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL01_RS10045 - 1872039..1872557 (-) 519 WP_000455530.1 GNAT family N-acetyltransferase -
  DQL01_RS10050 tsaE 1872547..1872990 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL01_RS10060 comM 1873181..1873801 (-) 621 WP_111702721.1 hypothetical protein Regulator
  DQL01_RS10070 - 1874184..1875047 (-) 864 WP_001093620.1 helix-turn-helix domain-containing protein -
  DQL01_RS12680 - 1875241..1875393 (+) 153 WP_152411221.1 PhrA family quorum-sensing system peptide -
  DQL01_RS10075 - 1875708..1876004 (+) 297 WP_000911559.1 lactococcin 972 family bacteriocin -
  DQL01_RS10080 - 1876107..1878122 (+) 2016 WP_000732381.1 bacteriocin-associated integral membrane family protein -
  DQL01_RS10085 - 1878124..1878756 (+) 633 WP_000571419.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23552.76 Da        Isoelectric Point: 10.2121

>NTDB_id=1142083 DQL01_RS10060 WP_111702721.1 1873181..1873801(-) (comM) [Streptococcus pneumoniae strain 4041STDY6836166]
MKSMRILFLLALIKISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1142083 DQL01_RS10060 WP_111702721.1 1873181..1873801(-) (comM) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTAAAATCAGTTTGAGTAGCTGTTTCTTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment