Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN076_RS02565 Genome accession   NZ_CP184836
Coordinates   499218..500384 (+) Length   388 a.a.
NCBI ID   WP_420790069.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494218..505384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS02535 (ACN076_02535) ndk 494494..494907 (+) 414 WP_061758889.1 nucleoside-diphosphate kinase -
  ACN076_RS02540 (ACN076_02540) comM 495141..495761 (+) 621 WP_061088457.1 hypothetical protein Regulator
  ACN076_RS02545 (ACN076_02545) tsaE 495846..496289 (+) 444 WP_061088456.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACN076_RS02550 (ACN076_02550) - 496279..496797 (+) 519 WP_000455533.1 GNAT family N-acetyltransferase -
  ACN076_RS02555 (ACN076_02555) brpA 496805..497821 (+) 1017 WP_000239270.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACN076_RS02560 (ACN076_02560) cinA 497907..499163 (+) 1257 WP_420790068.1 competence/damage-inducible protein A Machinery gene
  ACN076_RS02565 (ACN076_02565) recA 499218..500384 (+) 1167 WP_420790069.1 recombinase RecA Machinery gene
  ACN076_RS02570 (ACN076_02570) - 500499..501869 (+) 1371 WP_420790070.1 MATE family efflux transporter -
  ACN076_RS02575 (ACN076_02575) - 501966..502682 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACN076_RS02580 (ACN076_02580) - 502738..503379 (-) 642 WP_033678408.1 DUF308 domain-containing protein -
  ACN076_RS02585 (ACN076_02585) - 503595..504065 (+) 471 WP_061088451.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41674.43 Da        Isoelectric Point: 4.7155

>NTDB_id=1111436 ACN076_RS02565 WP_420790069.1 499218..500384(+) (recA) [Streptococcus sp. K0074]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEIFDEIDHLVRVQFGLVDGEEASVEVAESKKEEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1111436 ACN076_RS02565 WP_420790069.1 499218..500384(+) (recA) [Streptococcus sp. K0074]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAACTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCCTTGGCGCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGGCGTATCATTGAAATTTATGGACCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCGCAAGCACAAAAAGAAGGTGGTATTGCTGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCGGCTCTTGGTGTTAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTGGACCTTGTCGTGGTCGACTCAGTTGCG
GCCCTTGTACCTCGTGCGGAAATTGATGGAGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAGCTCGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCATCAGTTCGTTTGGATGTTCGTGGA
AGTACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTTGGTAAGGAGACCAAGATTAAGGTCGTGAAAAATAA
GGTGGCCCCACCGTTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAGCTTTTGAAGA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAACCCAGAAATCTTTGATGAGATTGACCATCTAGTCCGTGTTCAATTTGGTTTGGT
TGATGGAGAAGAAGCTTCTGTAGAAGTTGCTGAAAGCAAAAAAGAAGAAGCAGTTCAAGCGGATTCTGTGAATGAAGAAG
TAACTCTTGACCTAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

97.423

100

0.974
  recA Streptococcus mitis SK321

96.907

100

0.969
  recA Streptococcus pneumoniae Rx1

93.557

100

0.936
  recA Streptococcus pneumoniae D39

93.557

100

0.936
  recA Streptococcus pneumoniae R6

93.557

100

0.936
  recA Streptococcus pneumoniae TIGR4

93.557

100

0.936
  recA Streptococcus mutans UA159

84.416

99.227

0.838
  recA Streptococcus pyogenes NZ131

83.896

99.227

0.832
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

66.197

91.495

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Glaesserella parasuis strain SC1401

61.176

87.629

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.89

82.216

0.534
  recA Acinetobacter baumannii D1279779

60.651

87.113

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

84.536

0.526
  recA Vibrio cholerae strain A1552

62.229

83.247

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

83.247

0.518
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Neisseria gonorrhoeae MS11

61.95

81.959

0.508
  recA Neisseria gonorrhoeae MS11

61.95

81.959

0.508
  recA Neisseria gonorrhoeae strain FA1090

61.95

81.959

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

84.794

0.5
  recA Pseudomonas stutzeri DSM 10701

57.059

87.629

0.5
  recA Helicobacter pylori strain NCTC11637

57.751

84.794

0.49
  recA Helicobacter pylori 26695

57.751

84.794

0.49
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment