Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN076_RS02560 Genome accession   NZ_CP184836
Coordinates   497907..499163 (+) Length   418 a.a.
NCBI ID   WP_420790068.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492907..504163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS02535 (ACN076_02535) ndk 494494..494907 (+) 414 WP_061758889.1 nucleoside-diphosphate kinase -
  ACN076_RS02540 (ACN076_02540) comM 495141..495761 (+) 621 WP_061088457.1 hypothetical protein Regulator
  ACN076_RS02545 (ACN076_02545) tsaE 495846..496289 (+) 444 WP_061088456.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACN076_RS02550 (ACN076_02550) - 496279..496797 (+) 519 WP_000455533.1 GNAT family N-acetyltransferase -
  ACN076_RS02555 (ACN076_02555) brpA 496805..497821 (+) 1017 WP_000239270.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACN076_RS02560 (ACN076_02560) cinA 497907..499163 (+) 1257 WP_420790068.1 competence/damage-inducible protein A Machinery gene
  ACN076_RS02565 (ACN076_02565) recA 499218..500384 (+) 1167 WP_420790069.1 recombinase RecA Machinery gene
  ACN076_RS02570 (ACN076_02570) - 500499..501869 (+) 1371 WP_420790070.1 MATE family efflux transporter -
  ACN076_RS02575 (ACN076_02575) - 501966..502682 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACN076_RS02580 (ACN076_02580) - 502738..503379 (-) 642 WP_033678408.1 DUF308 domain-containing protein -
  ACN076_RS02585 (ACN076_02585) - 503595..504065 (+) 471 WP_061088451.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45261.64 Da        Isoelectric Point: 4.7209

>NTDB_id=1111435 ACN076_RS02560 WP_420790068.1 497907..499163(+) (cinA) [Streptococcus sp. K0074]
MKAEIIAVGTEILTGQIVNTNARFLSEKLAEIGVDVYFQMAVGDNEARLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFDPQAQEKLDVFFAQRPDYARTPNNERQAQIVDGATPLPNETGLAVGGILEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQI
LNRQTFEGLSLRELYYGYGEETSLASIVVEKLKRQGKTITAAESLTAGLFQARVADFSGVSSIFKGGFVTYSLEEKSKML
DIPVKDLEEHGVVSEFTAQKMAEQARSKTQSDFGISLTGVAGPDSLEGHPAGTVFIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1111435 ACN076_RS02560 WP_420790068.1 497907..499163(+) (cinA) [Streptococcus sp. K0074]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCCCGGTTTTTATCAGA
AAAACTAGCAGAGATTGGGGTAGACGTATATTTTCAGATGGCTGTAGGAGATAATGAAGCTCGTCTCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGTAGTCTGGTGATTTTGACAGGTGGTTTGGGGCCAACTGAGGACGACTTAACTAAACAAACT
CTGGCTAAATTTTTAGGGAAAGAATTAGTCTTTGATCCTCAGGCGCAGGAGAAGTTAGATGTCTTTTTTGCCCAGCGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCCCAAATTGTAGATGGAGCGACTCCACTGCCAAACGAAACAGGAC
TGGCTGTAGGAGGAATATTGGAAGTCGATGGAGTGACCTACGTTGTCCTTCCAGGTCCACCAAGTGAATTGAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGAATTGGCGA
AAGTCAGTTGGTGACCATTTTGGCTGATTTAATTGATAATCAAACCGATCCGACCTTGGCCCCTTATGCCAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAAGCTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTAGAAAACCAAATC
TTGAATCGCCAAACTTTTGAAGGCCTCTCTTTACGAGAACTTTATTATGGTTATGGGGAAGAGACTAGTTTAGCCAGTAT
TGTGGTAGAAAAGCTGAAAAGGCAAGGGAAAACTATCACGGCTGCAGAGAGTTTGACGGCAGGGCTTTTCCAAGCTAGGG
TAGCGGATTTTTCGGGTGTTTCAAGTATATTTAAGGGTGGTTTTGTAACCTATAGCTTGGAGGAAAAATCAAAAATGTTG
GATATTCCTGTCAAGGATTTGGAAGAGCACGGTGTGGTGTCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCAGATTTTGGCATTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTCGAAGGACACCCAGCTGGAACAG
TCTTCATAGGCTTGGCACAGGAGCAAGGAACTGAGGTTATCAAGGTGAATATTGGAGGCAGAAGTAGAGCAGATGTGCGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

96.172

100

0.962
  cinA Streptococcus mitis NCTC 12261

95.933

100

0.959
  cinA Streptococcus pneumoniae TIGR4

93.78

100

0.938
  cinA Streptococcus pneumoniae Rx1

93.541

100

0.935
  cinA Streptococcus pneumoniae R6

93.541

100

0.935
  cinA Streptococcus pneumoniae D39

93.301

100

0.933
  cinA Streptococcus mutans UA159

72.01

100

0.72
  cinA Streptococcus suis isolate S10

54.087

99.522

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment