Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACAM22_RS01155 Genome accession   NZ_AP028929
Coordinates   247046..248212 (+) Length   388 a.a.
NCBI ID   WP_084890945.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242046..253212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS01125 (MASAN616_02210) ndk 242209..242622 (+) 414 WP_261053461.1 nucleoside-diphosphate kinase -
  ACAM22_RS01130 (MASAN616_02220) comM 242968..243588 (+) 621 WP_049520987.1 hypothetical protein Regulator
  ACAM22_RS01135 (MASAN616_02230) tsaE 243673..244116 (+) 444 WP_261053473.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACAM22_RS01140 (MASAN616_02240) - 244106..244624 (+) 519 WP_261053474.1 GNAT family N-acetyltransferase -
  ACAM22_RS01145 (MASAN616_02250) - 244632..245648 (+) 1017 WP_261053475.1 LCP family protein -
  ACAM22_RS01150 (MASAN616_02260) cinA 245735..246991 (+) 1257 WP_261053476.1 competence/damage-inducible protein A Machinery gene
  ACAM22_RS01155 (MASAN616_02270) recA 247046..248212 (+) 1167 WP_084890945.1 recombinase RecA Machinery gene
  ACAM22_RS01160 (MASAN616_02280) - 248328..249698 (+) 1371 WP_261053479.1 MATE family efflux transporter -
  ACAM22_RS01165 (MASAN616_02290) - 249795..250511 (+) 717 WP_261053480.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACAM22_RS01170 (MASAN616_02300) - 250567..251208 (-) 642 WP_369606822.1 DUF4190 domain-containing protein -
  ACAM22_RS01175 (MASAN616_02310) - 251433..251903 (+) 471 WP_369606823.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41698.41 Da        Isoelectric Point: 4.7605

>NTDB_id=107309 ACAM22_RS01155 WP_084890945.1 247046..248212(+) (recA) [Streptococcus sp. SN-1]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADHPEIFDEIDHQVRVQFGLVDGEEASVEGVETKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=107309 ACAM22_RS01155 WP_084890945.1 247046..248212(+) (recA) [Streptococcus sp. SN-1]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGATGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GTTCAGGTTCTTTGGCCCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGGCGTATCATCGAAATCTATGGGCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCGCAAGCGCAAAAAGAAGGTGGTATTGCAGCCTTTATCGA
TGCGGAGCATGCCCTCGATCCAGCTTATGCTGCGGCTCTTGGTGTCAACATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCTGTAGACCTTGTCGTGGTCGACTCAGTTGCG
GCCCTTGTACCTCGTGCGGAAATTGATGGAGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAGCTCGGTGCTTCTATCAATAAAACAAAAACTATTGCCATCTTTATCAACCAATTGCGTGAAAAGGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGTACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAAACTAAAATCAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCTTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAGCTTTTGAAAA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATCACCCAGAAATCTTTGATGAAATTGACCATCAAGTCCGTGTTCAATTTGGTTTGGT
TGATGGAGAAGAAGCTTCTGTAGAAGGTGTTGAAACTAAAAAAGATGAAGCAGTTCAAGCAGACTCTGTGAATGAAGAAG
TCACACTTGATCTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

97.165

100

0.972
  recA Streptococcus mitis SK321

96.649

100

0.966
  recA Streptococcus pneumoniae Rx1

94.33

100

0.943
  recA Streptococcus pneumoniae D39

94.33

100

0.943
  recA Streptococcus pneumoniae R6

94.33

100

0.943
  recA Streptococcus pneumoniae TIGR4

94.33

100

0.943
  recA Streptococcus mutans UA159

83.636

99.227

0.83
  recA Streptococcus pyogenes NZ131

91.014

88.918

0.809
  recA Lactococcus lactis subsp. cremoris KW2

78.693

90.722

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Glaesserella parasuis strain SC1401

60.882

87.629

0.534
  recA Acinetobacter baumannii D1279779

60.534

86.856

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

84.536

0.523
  recA Vibrio cholerae strain A1552

61.92

83.247

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.247

0.515
  recA Acinetobacter baylyi ADP1

61.043

84.021

0.513
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae strain FA1090

61.635

81.959

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

84.794

0.497
  recA Pseudomonas stutzeri DSM 10701

58.589

84.021

0.492
  recA Helicobacter pylori strain NCTC11637

57.751

84.794

0.49
  recA Helicobacter pylori 26695

57.751

84.794

0.49
  recA Ralstonia pseudosolanacearum GMI1000

59.306

81.701

0.485

Multiple sequence alignment