Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACAM22_RS01150 Genome accession   NZ_AP028929
Coordinates   245735..246991 (+) Length   418 a.a.
NCBI ID   WP_261053476.1    Uniprot ID   A0AAT9FYU4
Organism   Streptococcus sp. SN-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240735..251991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS01125 (MASAN616_02210) ndk 242209..242622 (+) 414 WP_261053461.1 nucleoside-diphosphate kinase -
  ACAM22_RS01130 (MASAN616_02220) comM 242968..243588 (+) 621 WP_049520987.1 hypothetical protein Regulator
  ACAM22_RS01135 (MASAN616_02230) tsaE 243673..244116 (+) 444 WP_261053473.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACAM22_RS01140 (MASAN616_02240) - 244106..244624 (+) 519 WP_261053474.1 GNAT family N-acetyltransferase -
  ACAM22_RS01145 (MASAN616_02250) - 244632..245648 (+) 1017 WP_261053475.1 LCP family protein -
  ACAM22_RS01150 (MASAN616_02260) cinA 245735..246991 (+) 1257 WP_261053476.1 competence/damage-inducible protein A Machinery gene
  ACAM22_RS01155 (MASAN616_02270) recA 247046..248212 (+) 1167 WP_084890945.1 recombinase RecA Machinery gene
  ACAM22_RS01160 (MASAN616_02280) - 248328..249698 (+) 1371 WP_261053479.1 MATE family efflux transporter -
  ACAM22_RS01165 (MASAN616_02290) - 249795..250511 (+) 717 WP_261053480.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACAM22_RS01170 (MASAN616_02300) - 250567..251208 (-) 642 WP_369606822.1 DUF4190 domain-containing protein -
  ACAM22_RS01175 (MASAN616_02310) - 251433..251903 (+) 471 WP_369606823.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45232.57 Da        Isoelectric Point: 4.8351

>NTDB_id=107308 ACAM22_RS01150 WP_261053476.1 245735..246991(+) (cinA) [Streptococcus sp. SN-1]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNETRLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKKLVFDSQTQDKLDVFFAQRPDYARTPNNERQAQIVEGATPLPNETGLAVGGMLEVNGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIENQTDPTLAPYAKTGEVTLRLSTKASSQEEANRVLNILENQI
LNRQTFEGLSLRELCYGYGEETSLASIVVEELKRQGKTITAAESLTAGLFQATVADFSGASSIFKGGFVTYSLEEKSKML
DIPVKDLEEHGVVSEFTAQKMAEQARSKTQSDFGLSLTGVAGPDSLEGHPAGTVFIGLAQEHGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=107308 ACAM22_RS01150 WP_261053476.1 245735..246991(+) (cinA) [Streptococcus sp. SN-1]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACTGGACAGATTGTCAATACTAATGCTCAGTTTTTGTCGGA
AAAACTGGCAGAGATTGGAGTAGACGTATATTTTCAGACGGCTGTAGGAGACAATGAAACTCGTCTCTTATCCCTGCTTG
AGATTGCCAGTCAACGTAGTAATCTGGTGATTTTGACAGGTGGTTTGGGGCCAACTGAGGACGATTTGACTAAACAAACC
CTAGCTAAATTCTTAGGGAAAAAATTAGTCTTTGATTCTCAGACTCAGGATAAGTTGGATGTCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCTCAGATTGTAGAAGGAGCGACTCCACTGCCAAACGAAACAGGGC
TGGCTGTGGGAGGAATGTTGGAAGTCAATGGAGTGACCTACGTCGTCCTTCCAGGTCCACCAAGTGAATTGAAACCTATG
GTCTTAAACCAACTTCTACCTAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGAATTGGCGA
AAGTCAGCTGGTGACGATTTTGGCTGATTTGATTGAGAATCAAACAGATCCGACCTTGGCGCCTTATGCAAAGACAGGAG
AGGTAACACTGCGCTTGTCAACAAAAGCTAGCAGTCAAGAAGAGGCTAATCGAGTGCTGAATATCTTGGAGAATCAAATC
TTGAATCGCCAGACTTTTGAAGGCCTTTCTTTACGAGAGCTTTGTTATGGGTATGGGGAAGAAACTAGTTTAGCCAGCAT
TGTGGTAGAAGAACTGAAAAGGCAAGGGAAAACTATCACAGCTGCAGAAAGCTTGACGGCAGGTCTTTTCCAAGCTACCG
TGGCGGATTTTTCTGGAGCTTCAAGTATATTTAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAAGATGTTG
GATATTCCTGTCAAGGATTTGGAAGAACATGGTGTAGTGTCTGAATTTACAGCTCAAAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCTGATTTTGGCCTTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGGCACCCAGCTGGGACAG
TCTTCATAGGCTTGGCTCAAGAGCATGGAACTGAGGTCATCAAGGTCAATATTGGAGGCAGAAGTCGAGCGGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

95.455

100

0.955
  cinA Streptococcus mitis NCTC 12261

94.737

100

0.947
  cinA Streptococcus pneumoniae TIGR4

92.344

100

0.923
  cinA Streptococcus pneumoniae Rx1

92.105

100

0.921
  cinA Streptococcus pneumoniae R6

92.105

100

0.921
  cinA Streptococcus pneumoniae D39

91.866

100

0.919
  cinA Streptococcus mutans UA159

71.053

100

0.711
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

45.933

100

0.459

Multiple sequence alignment