Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GGGNBK_RS07920 Genome accession   NZ_CP173271
Coordinates   1697537..1698595 (+) Length   352 a.a.
NCBI ID   WP_149580219.1    Uniprot ID   A0A5B0DKT8
Organism   Sporosarcina sp. ANT_H38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1692537..1703595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGGNBK_RS07895 (GGGNBK_08155) ymfI 1692904..1693638 (+) 735 WP_370456046.1 elongation factor P 5-aminopentanone reductase -
  GGGNBK_RS07900 (GGGNBK_08160) - 1693774..1694571 (+) 798 WP_149580223.1 DUF3388 domain-containing protein -
  GGGNBK_RS07905 (GGGNBK_08165) - 1694588..1695463 (+) 876 WP_188006691.1 helix-turn-helix domain-containing protein -
  GGGNBK_RS07910 (GGGNBK_08170) pgsA 1695514..1696092 (+) 579 WP_149580221.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GGGNBK_RS07915 (GGGNBK_08175) cinA 1696107..1697360 (+) 1254 WP_149580220.1 competence/damage-inducible protein A Machinery gene
  GGGNBK_RS07920 (GGGNBK_08180) recA 1697537..1698595 (+) 1059 WP_149580219.1 recombinase RecA Machinery gene
  GGGNBK_RS07925 (GGGNBK_08185) rny 1698843..1700408 (+) 1566 WP_149580218.1 ribonuclease Y -
  GGGNBK_RS07930 (GGGNBK_08190) - 1700474..1701271 (+) 798 WP_149580217.1 TIGR00282 family metallophosphoesterase -
  GGGNBK_RS07935 (GGGNBK_08195) - 1701358..1701630 (+) 273 WP_149580216.1 stage V sporulation protein S -
  GGGNBK_RS07940 (GGGNBK_08200) miaB 1702016..1703557 (+) 1542 WP_149580215.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37904.90 Da        Isoelectric Point: 4.7354

>NTDB_id=1071346 GGGNBK_RS07920 WP_149580219.1 1697537..1698595(+) (recA) [Sporosarcina sp. ANT_H38]
MSDRKAALDMALKQIEKQFGKGSIMKLGEKTNLEVETSSTGSLALDSALGIGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAAGGTAAFIDAEHALDPVYARKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIFVVDSVAALVPKAEIEGEMGDS
HIGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGSPEVTPGGRALKFYSSVRLDVRRGEAIKQGNDIVGNKT
RIRVVKNKVAPPFKTAEVDIMYGEGISREGEIIDLGADSEVVQKSGSWYSYEGERLGQGRENSKQFLKENPDIRAEIANK
IRESYGLATSNYVIGAHDVDEDEELELLLGEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1071346 GGGNBK_RS07920 WP_149580219.1 1697537..1698595(+) (recA) [Sporosarcina sp. ANT_H38]
TTGAGCGATCGTAAAGCCGCCTTAGATATGGCGTTAAAACAGATTGAAAAGCAATTTGGTAAAGGATCTATTATGAAACT
GGGTGAAAAAACAAACCTGGAAGTTGAAACTTCTTCGACAGGCTCCCTTGCACTCGATTCTGCACTCGGCATAGGTGGGT
ATCCACGTGGACGAGTTATTGAAATATACGGACCTGAGAGTTCGGGTAAGACGACTGTTGCTCTTCATGCCATCGCAGAA
GTACAAGCAGCCGGAGGAACAGCGGCATTTATCGACGCTGAGCATGCGCTTGATCCAGTTTATGCCCGTAAATTAGGCGT
TAATATCGACGAGTTACTACTTTCCCAGCCTGATACGGGAGAGCAAGCACTTGAAATCGCTGAAGCGCTTGTAAGAAGCG
GTGCAGTTGATATTTTTGTTGTTGACTCCGTAGCTGCACTTGTTCCCAAAGCGGAAATTGAAGGGGAAATGGGAGATTCG
CATATCGGATTACAAGCCCGTCTCATGTCACAGGCTTTACGTAAACTTTCCGGTGCCATTAATAAATCGAACACGATTGC
GATCTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAGCCCTGAAGTAACTCCAGGTGGACGAGCATTGA
AATTTTACTCTTCCGTACGTCTTGATGTAAGACGTGGAGAAGCGATCAAACAAGGCAATGATATAGTGGGAAATAAAACA
CGAATCCGCGTTGTGAAAAATAAAGTTGCACCTCCGTTTAAAACAGCGGAAGTTGATATTATGTACGGAGAAGGAATTTC
TAGAGAAGGAGAAATCATCGATCTTGGTGCTGACTCCGAAGTTGTCCAAAAAAGTGGATCTTGGTATTCCTATGAAGGAG
AACGACTTGGACAGGGACGAGAGAATTCGAAGCAGTTCTTGAAGGAAAACCCGGATATCCGTGCGGAAATCGCCAATAAA
ATTCGTGAGTCTTATGGACTTGCTACCTCAAACTATGTTATTGGAGCTCATGACGTAGATGAAGATGAAGAGTTGGAACT
TTTGCTAGGTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0DKT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.084

94.602

0.795
  recA Latilactobacillus sakei subsp. sakei 23K

73.62

92.614

0.682
  recA Streptococcus mitis NCTC 12261

63.712

100

0.653
  recA Streptococcus pyogenes NZ131

64.387

99.716

0.642
  recA Streptococcus mutans UA159

68.085

93.466

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.683

93.182

0.631
  recA Streptococcus pneumoniae R6

66.97

93.75

0.628
  recA Streptococcus mitis SK321

66.97

93.75

0.628
  recA Streptococcus pneumoniae TIGR4

66.97

93.75

0.628
  recA Streptococcus pneumoniae Rx1

66.97

93.75

0.628
  recA Streptococcus pneumoniae D39

66.97

93.75

0.628
  recA Acinetobacter baylyi ADP1

63.663

97.727

0.622
  recA Neisseria gonorrhoeae MS11

66.565

93.466

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.565

93.466

0.622
  recA Neisseria gonorrhoeae MS11

66.565

93.466

0.622
  recA Acinetobacter baumannii D1279779

62.824

98.58

0.619
  recA Vibrio cholerae strain A1552

67.601

91.193

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.601

91.193

0.616
  recA Lactococcus lactis subsp. cremoris KW2

65.455

93.75

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

97.443

0.608
  recA Glaesserella parasuis strain SC1401

62.463

96.875

0.605
  recA Pseudomonas stutzeri DSM 10701

63.83

93.466

0.597
  recA Helicobacter pylori strain NCTC11637

62.769

92.33

0.58
  recA Helicobacter pylori 26695

62.462

92.33

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

92.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

90.909

0.571

Multiple sequence alignment