Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GGGNBK_RS07915 Genome accession   NZ_CP173271
Coordinates   1696107..1697360 (+) Length   417 a.a.
NCBI ID   WP_149580220.1    Uniprot ID   A0A5B0DKN3
Organism   Sporosarcina sp. ANT_H38     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1691107..1702360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGGNBK_RS07890 (GGGNBK_08150) yfmH 1691609..1692904 (+) 1296 WP_149580832.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GGGNBK_RS07895 (GGGNBK_08155) ymfI 1692904..1693638 (+) 735 WP_370456046.1 elongation factor P 5-aminopentanone reductase -
  GGGNBK_RS07900 (GGGNBK_08160) - 1693774..1694571 (+) 798 WP_149580223.1 DUF3388 domain-containing protein -
  GGGNBK_RS07905 (GGGNBK_08165) - 1694588..1695463 (+) 876 WP_188006691.1 helix-turn-helix domain-containing protein -
  GGGNBK_RS07910 (GGGNBK_08170) pgsA 1695514..1696092 (+) 579 WP_149580221.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GGGNBK_RS07915 (GGGNBK_08175) cinA 1696107..1697360 (+) 1254 WP_149580220.1 competence/damage-inducible protein A Machinery gene
  GGGNBK_RS07920 (GGGNBK_08180) recA 1697537..1698595 (+) 1059 WP_149580219.1 recombinase RecA Machinery gene
  GGGNBK_RS07925 (GGGNBK_08185) rny 1698843..1700408 (+) 1566 WP_149580218.1 ribonuclease Y -
  GGGNBK_RS07930 (GGGNBK_08190) - 1700474..1701271 (+) 798 WP_149580217.1 TIGR00282 family metallophosphoesterase -
  GGGNBK_RS07935 (GGGNBK_08195) - 1701358..1701630 (+) 273 WP_149580216.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45052.79 Da        Isoelectric Point: 5.0143

>NTDB_id=1071345 GGGNBK_RS07915 WP_149580220.1 1696107..1697360(+) (cinA) [Sporosarcina sp. ANT_H38]
MKAEIIAIGSELLLGQITNTNAKFISLKLAEIGIDVHYQTVVGDNPDRLNEVIEIARKRADILIFTGGLGPTKDDMTKET
IVKHIGTTLVSDDEALLYIQQYFERSGRVMTENNKKQALVFKGAKVLANRKGMAPGMAVEKDGVRYILLPGPPHEMEPMF
TDEAIPYLLGVTGKQEVITSRILKFYGIGEAELEHQIQPILEKQTNPTVAPLATADAVTLRLTAKAQTTDAAMKLIAPLE
EEIRSLVGEFIYGTDDDTLSSKAAELLIRNGWTIAAAESLTAGLFMAELAGEPGISSSLEGGIVVYNEKSKVEQLGIEQS
ILAEYGVVSAECAAALAVNVKRTFKTDIGIGLTGAAGPDPHDGKPVGTVWIGIASTNADTETFKLLLSGSRNANRLRAAR
FALYYLIKHLTEKEVQS

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1071345 GGGNBK_RS07915 WP_149580220.1 1696107..1697360(+) (cinA) [Sporosarcina sp. ANT_H38]
ATGAAAGCAGAAATTATTGCGATTGGTTCTGAGTTATTACTTGGACAAATTACGAATACGAACGCTAAATTCATTTCATT
AAAACTTGCGGAAATTGGCATTGATGTCCATTATCAGACAGTCGTTGGTGATAACCCAGATCGATTGAATGAAGTCATTG
AAATTGCAAGGAAACGTGCGGATATTTTAATCTTTACAGGTGGACTCGGGCCAACGAAAGATGACATGACAAAAGAAACA
ATTGTAAAGCATATTGGCACAACGCTAGTTAGCGATGACGAGGCGCTTCTTTATATTCAGCAATATTTCGAGCGCAGTGG
TCGGGTTATGACAGAGAACAATAAGAAACAGGCGCTAGTTTTTAAAGGCGCGAAAGTCTTAGCGAACCGAAAAGGAATGG
CACCCGGGATGGCAGTGGAAAAAGATGGCGTGCGATATATCCTTCTGCCAGGACCACCGCATGAAATGGAGCCGATGTTT
ACGGATGAGGCGATTCCTTATTTGTTAGGTGTTACTGGCAAACAGGAAGTCATCACTTCGCGTATCCTGAAGTTTTATGG
TATTGGCGAGGCTGAGCTTGAACACCAGATTCAGCCCATTTTGGAGAAACAGACAAATCCGACAGTTGCACCGCTAGCAA
CGGCCGACGCAGTCACGTTACGCCTCACTGCAAAAGCACAAACGACCGATGCAGCGATGAAGCTAATCGCGCCTTTGGAA
GAAGAAATTCGTTCACTCGTTGGTGAATTCATCTATGGCACGGATGATGATACATTGTCATCCAAGGCTGCGGAACTCCT
AATTCGAAACGGTTGGACAATAGCCGCAGCAGAAAGTCTGACGGCAGGCCTATTTATGGCAGAACTGGCCGGTGAACCAG
GGATTAGTTCGTCACTCGAAGGTGGCATTGTTGTTTACAATGAGAAATCGAAAGTGGAACAACTTGGTATTGAGCAGTCT
ATACTTGCGGAGTATGGTGTCGTCAGTGCAGAATGCGCGGCCGCTCTTGCGGTAAACGTAAAACGTACGTTCAAAACGGA
TATCGGAATAGGTCTAACGGGTGCGGCAGGCCCAGATCCACATGATGGGAAGCCGGTCGGCACTGTGTGGATTGGTATTG
CTTCTACAAATGCAGATACAGAGACATTTAAGTTGTTGCTGTCGGGTTCAAGAAACGCAAACCGTCTCAGAGCAGCAAGA
TTTGCGCTCTATTATCTCATAAAACACTTAACTGAAAAAGAAGTGCAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0DKN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.243

98.801

0.496
  cinA Streptococcus pneumoniae TIGR4

44.125

100

0.441
  cinA Streptococcus pneumoniae Rx1

44.125

100

0.441
  cinA Streptococcus pneumoniae R6

44.125

100

0.441
  cinA Streptococcus pneumoniae D39

43.885

100

0.439
  cinA Streptococcus mitis NCTC 12261

43.405

100

0.434
  cinA Streptococcus mitis SK321

43.165

100

0.432
  cinA Streptococcus mutans UA159

41.404

99.041

0.41

Multiple sequence alignment