Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACG4IU_RS01600 Genome accession   NZ_CP171664
Coordinates   327864..328928 (+) Length   354 a.a.
NCBI ID   WP_000344154.1    Uniprot ID   A0A0K9UMZ1
Organism   Vibrio cholerae strain M813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 305140..332274 327864..328928 within 0


Gene organization within MGE regions


Location: 305140..332274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IU_RS01470 - 305140..305835 (-) 696 WP_000213836.1 hypothetical protein -
  ACG4IU_RS01480 - 307052..308011 (-) 960 WP_001909624.1 tape measure protein -
  ACG4IU_RS01485 - 308227..308586 (-) 360 WP_000290080.1 phage tail assembly protein -
  ACG4IU_RS01490 - 308635..309006 (-) 372 WP_000401420.1 hypothetical protein -
  ACG4IU_RS01495 - 309067..309645 (-) 579 WP_000059473.1 hypothetical protein -
  ACG4IU_RS01500 - 309664..309984 (-) 321 WP_000035502.1 Mor transcription activator family protein -
  ACG4IU_RS01505 - 309971..310345 (-) 375 WP_000879671.1 Mor transcription activator family protein -
  ACG4IU_RS01510 - 310925..311158 (-) 234 WP_001059182.1 hypothetical protein -
  ACG4IU_RS01515 - 311155..311616 (-) 462 WP_001064711.1 hypothetical protein -
  ACG4IU_RS01520 - 311619..312728 (-) 1110 WP_394861227.1 ExeA family protein -
  ACG4IU_RS01525 - 312700..314457 (-) 1758 WP_000992438.1 DDE-type integrase/transposase/recombinase -
  ACG4IU_RS01530 - 314464..315435 (-) 972 WP_001278803.1 hypothetical protein -
  ACG4IU_RS01535 - 315437..315733 (-) 297 WP_001881563.1 helix-turn-helix domain-containing protein -
  ACG4IU_RS01540 - 315774..316109 (-) 336 WP_000444114.1 hypothetical protein -
  ACG4IU_RS01545 - 316099..316335 (-) 237 WP_000895452.1 hypothetical protein -
  ACG4IU_RS01550 - 316686..316886 (+) 201 WP_001900517.1 hypothetical protein -
  ACG4IU_RS01555 - 317128..317826 (+) 699 Protein_289 peptidoglycan DD-metalloendopeptidase family protein -
  ACG4IU_RS01560 rpoS 317900..318907 (+) 1008 WP_000116737.1 RNA polymerase sigma factor RpoS Regulator
  ACG4IU_RS01565 mutS 319000..321588 (-) 2589 WP_001894770.1 DNA mismatch repair protein MutS -
  ACG4IU_RS01570 cysM 321856..322743 (-) 888 WP_001279365.1 cysteine synthase CysM -
  ACG4IU_RS01575 cysP 323127..324128 (+) 1002 WP_001079835.1 thiosulfate ABC transporter substrate-binding protein CysP -
  ACG4IU_RS01580 cysT 324205..325056 (+) 852 WP_000531810.1 sulfate/thiosulfate ABC transporter permease CysT -
  ACG4IU_RS01585 cysW 325067..325930 (+) 864 WP_000951362.1 sulfate ABC transporter permease subunit CysW -
  ACG4IU_RS01590 - 325927..327057 (+) 1131 WP_000027776.1 sulfate/molybdate ABC transporter ATP-binding protein -
  ACG4IU_RS01595 pncC 327224..327730 (+) 507 WP_000853811.1 nicotinamide-nucleotide amidase -
  ACG4IU_RS01600 recA 327864..328928 (+) 1065 WP_000344154.1 recombinase RecA Machinery gene
  ACG4IU_RS01605 recX 329061..329519 (+) 459 WP_000006855.1 recombination regulator RecX -
  ACG4IU_RS01610 alaS 329692..332274 (+) 2583 WP_000481017.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38249.92 Da        Isoelectric Point: 5.0766

>NTDB_id=1062715 ACG4IU_RS01600 WP_000344154.1 327864..328928(+) (recA) [Vibrio cholerae strain M813]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1062715 ACG4IU_RS01600 WP_000344154.1 327864..328928(+) (recA) [Vibrio cholerae strain M813]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GTCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTGGATCCGGTTTATGCCAAAAAATTGGG
CGTGAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCTGTGGATGTCATCGTTGTTGACTCAGTAGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAGAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UMZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

100

100

1
  recA Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Acinetobacter baylyi ADP1

70.69

98.305

0.695
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae strain FA1090

66.949

100

0.669
  recA Ralstonia pseudosolanacearum GMI1000

69.659

91.243

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.525

0.59
  recA Helicobacter pylori strain NCTC11637

61.31

94.915

0.582
  recA Helicobacter pylori 26695

61.012

94.915

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.3

88.418

0.551

Multiple sequence alignment