Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACG4IU_RS01560 Genome accession   NZ_CP171664
Coordinates   317900..318907 (+) Length   335 a.a.
NCBI ID   WP_000116737.1    Uniprot ID   O51804
Organism   Vibrio cholerae strain M813     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 305140..332274 317900..318907 within 0


Gene organization within MGE regions


Location: 305140..332274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IU_RS01470 - 305140..305835 (-) 696 WP_000213836.1 hypothetical protein -
  ACG4IU_RS01480 - 307052..308011 (-) 960 WP_001909624.1 tape measure protein -
  ACG4IU_RS01485 - 308227..308586 (-) 360 WP_000290080.1 phage tail assembly protein -
  ACG4IU_RS01490 - 308635..309006 (-) 372 WP_000401420.1 hypothetical protein -
  ACG4IU_RS01495 - 309067..309645 (-) 579 WP_000059473.1 hypothetical protein -
  ACG4IU_RS01500 - 309664..309984 (-) 321 WP_000035502.1 Mor transcription activator family protein -
  ACG4IU_RS01505 - 309971..310345 (-) 375 WP_000879671.1 Mor transcription activator family protein -
  ACG4IU_RS01510 - 310925..311158 (-) 234 WP_001059182.1 hypothetical protein -
  ACG4IU_RS01515 - 311155..311616 (-) 462 WP_001064711.1 hypothetical protein -
  ACG4IU_RS01520 - 311619..312728 (-) 1110 WP_394861227.1 ExeA family protein -
  ACG4IU_RS01525 - 312700..314457 (-) 1758 WP_000992438.1 DDE-type integrase/transposase/recombinase -
  ACG4IU_RS01530 - 314464..315435 (-) 972 WP_001278803.1 hypothetical protein -
  ACG4IU_RS01535 - 315437..315733 (-) 297 WP_001881563.1 helix-turn-helix domain-containing protein -
  ACG4IU_RS01540 - 315774..316109 (-) 336 WP_000444114.1 hypothetical protein -
  ACG4IU_RS01545 - 316099..316335 (-) 237 WP_000895452.1 hypothetical protein -
  ACG4IU_RS01550 - 316686..316886 (+) 201 WP_001900517.1 hypothetical protein -
  ACG4IU_RS01555 - 317128..317826 (+) 699 Protein_289 peptidoglycan DD-metalloendopeptidase family protein -
  ACG4IU_RS01560 rpoS 317900..318907 (+) 1008 WP_000116737.1 RNA polymerase sigma factor RpoS Regulator
  ACG4IU_RS01565 mutS 319000..321588 (-) 2589 WP_001894770.1 DNA mismatch repair protein MutS -
  ACG4IU_RS01570 cysM 321856..322743 (-) 888 WP_001279365.1 cysteine synthase CysM -
  ACG4IU_RS01575 cysP 323127..324128 (+) 1002 WP_001079835.1 thiosulfate ABC transporter substrate-binding protein CysP -
  ACG4IU_RS01580 cysT 324205..325056 (+) 852 WP_000531810.1 sulfate/thiosulfate ABC transporter permease CysT -
  ACG4IU_RS01585 cysW 325067..325930 (+) 864 WP_000951362.1 sulfate ABC transporter permease subunit CysW -
  ACG4IU_RS01590 - 325927..327057 (+) 1131 WP_000027776.1 sulfate/molybdate ABC transporter ATP-binding protein -
  ACG4IU_RS01595 pncC 327224..327730 (+) 507 WP_000853811.1 nicotinamide-nucleotide amidase -
  ACG4IU_RS01600 recA 327864..328928 (+) 1065 WP_000344154.1 recombinase RecA Machinery gene
  ACG4IU_RS01605 recX 329061..329519 (+) 459 WP_000006855.1 recombination regulator RecX -
  ACG4IU_RS01610 alaS 329692..332274 (+) 2583 WP_000481017.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38534.39 Da        Isoelectric Point: 4.3648

>NTDB_id=1062713 ACG4IU_RS01560 WP_000116737.1 317900..318907(+) (rpoS) [Vibrio cholerae strain M813]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1062713 ACG4IU_RS01560 WP_000116737.1 317900..318907(+) (rpoS) [Vibrio cholerae strain M813]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O51804

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1

Multiple sequence alignment