Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABKJ27_RS01270 Genome accession   NZ_CP157578
Coordinates   252303..253469 (+) Length   388 a.a.
NCBI ID   WP_238095613.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247303..258469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01240 (ABKJ27_01245) ndk 247620..248042 (+) 423 WP_247932099.1 nucleoside-diphosphate kinase -
  ABKJ27_RS01245 (ABKJ27_01250) comM 248175..248804 (+) 630 WP_261122149.1 competence protein Regulator
  ABKJ27_RS01250 (ABKJ27_01255) tsaE 248900..249343 (+) 444 WP_214614811.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABKJ27_RS01255 (ABKJ27_01260) - 249333..249851 (+) 519 WP_261047892.1 GNAT family N-acetyltransferase -
  ABKJ27_RS01260 (ABKJ27_01265) brpA 249859..250914 (+) 1056 WP_004256717.1 biofilm formation/cell division transcriptional regulator BrpA -
  ABKJ27_RS01265 (ABKJ27_01270) cinA 250992..252248 (+) 1257 WP_049516122.1 competence/damage-inducible protein A Machinery gene
  ABKJ27_RS01270 (ABKJ27_01275) recA 252303..253469 (+) 1167 WP_238095613.1 recombinase RecA Machinery gene
  ABKJ27_RS01275 (ABKJ27_01280) - 253691..255061 (+) 1371 WP_410011874.1 MATE family efflux transporter -
  ABKJ27_RS01280 (ABKJ27_01285) - 255158..255874 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABKJ27_RS01285 (ABKJ27_01290) - 255924..256571 (-) 648 WP_386684791.1 DUF4190 domain-containing protein -
  ABKJ27_RS01290 (ABKJ27_01295) - 256785..257255 (+) 471 WP_084925611.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41689.40 Da        Isoelectric Point: 4.7095

>NTDB_id=1007437 ABKJ27_RS01270 WP_238095613.1 252303..253469(+) (recA) [Streptococcus sp. KHUD_011]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDDVVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1007437 ABKJ27_RS01270 WP_238095613.1 252303..253469(+) (recA) [Streptococcus sp. KHUD_011]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GTTCAGGTTCTTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTACGGACCA
GAGTCATCTGGTAAGACAACTGTTGCCCTTCATGCAGTTGCACAAGCTCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCGGCTCTTGGTGTCAACATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGATTCAGGTGCTGTGGACCTTGTCGTAGTTGACTCAGTTGCT
GCCCTTGTCCCTCGTGCGGAAATTGATGGCGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAGCTCGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTTTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAAGAAACTAAAATCAAGGTTGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAGCTTTTGAAGA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAACCCAGAAGTCTTTGATGAGATTGATCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAAGAAGCTTCTGTAGAAGGTGTTGAAACTAAAAAAGATGACGTAGTTCAAGCAGATTCTGTGAATGAAGAAG
TGACACTTGACCTAGGTGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

97.423

100

0.974
  recA Streptococcus mitis NCTC 12261

96.907

100

0.969
  recA Streptococcus pneumoniae Rx1

93.814

100

0.938
  recA Streptococcus pneumoniae D39

93.814

100

0.938
  recA Streptococcus pneumoniae R6

93.814

100

0.938
  recA Streptococcus pneumoniae TIGR4

93.814

100

0.938
  recA Streptococcus mutans UA159

83.896

99.227

0.832
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.693

90.722

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Glaesserella parasuis strain SC1401

60.882

87.629

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

84.536

0.526
  recA Acinetobacter baumannii D1279779

60.534

86.856

0.526
  recA Vibrio cholerae strain A1552

61.92

83.247

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.247

0.515
  recA Acinetobacter baylyi ADP1

61.043

84.021

0.513
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae strain FA1090

61.635

81.959

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

84.794

0.497
  recA Pseudomonas stutzeri DSM 10701

58.589

84.021

0.492
  recA Helicobacter pylori strain NCTC11637

57.751

84.794

0.49
  recA Helicobacter pylori 26695

57.751

84.794

0.49
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment