Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABKJ27_RS01265 Genome accession   NZ_CP157578
Coordinates   250992..252248 (+) Length   418 a.a.
NCBI ID   WP_049516122.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 245992..257248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01240 (ABKJ27_01245) ndk 247620..248042 (+) 423 WP_247932099.1 nucleoside-diphosphate kinase -
  ABKJ27_RS01245 (ABKJ27_01250) comM 248175..248804 (+) 630 WP_261122149.1 competence protein Regulator
  ABKJ27_RS01250 (ABKJ27_01255) tsaE 248900..249343 (+) 444 WP_214614811.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABKJ27_RS01255 (ABKJ27_01260) - 249333..249851 (+) 519 WP_261047892.1 GNAT family N-acetyltransferase -
  ABKJ27_RS01260 (ABKJ27_01265) brpA 249859..250914 (+) 1056 WP_004256717.1 biofilm formation/cell division transcriptional regulator BrpA -
  ABKJ27_RS01265 (ABKJ27_01270) cinA 250992..252248 (+) 1257 WP_049516122.1 competence/damage-inducible protein A Machinery gene
  ABKJ27_RS01270 (ABKJ27_01275) recA 252303..253469 (+) 1167 WP_238095613.1 recombinase RecA Machinery gene
  ABKJ27_RS01275 (ABKJ27_01280) - 253691..255061 (+) 1371 WP_410011874.1 MATE family efflux transporter -
  ABKJ27_RS01280 (ABKJ27_01285) - 255158..255874 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABKJ27_RS01285 (ABKJ27_01290) - 255924..256571 (-) 648 WP_386684791.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44956.30 Da        Isoelectric Point: 4.6578

>NTDB_id=1007436 ABKJ27_RS01265 WP_049516122.1 250992..252248(+) (cinA) [Streptococcus sp. KHUD_011]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSSLLILTGGLGPTEDDLTKQT
LAKFLGKKLVFDPQAQAKLDVFFAQRPDYARTPNNERQAQLVEGATPLPNETGLAVGGILEVEGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLHSRVLRFFGIGESQLVTILSDLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQVLDILENQI
LGRQTFEGLSLRDLCYGYGEETSLASIVVEELKKQGKTITAAESLTAGLFQASVADFSGASSIFKGGFVTYSLEEKSKML
DISVKDLEEQGVVSEFTAQKMAEQARIKTQSDFGLSLTGVAGPDSLEGHPAGTVFIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1007436 ABKJ27_RS01265 WP_049516122.1 250992..252248(+) (cinA) [Streptococcus sp. KHUD_011]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCTCAGTTTTTGTCGGA
AAAACTAGCAGAGATTGGGGTAGATGTATATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTCTCTTATCCCTGCTTG
AGATTGCCAGTCAACGTAGCAGCCTGCTGATTTTGACAGGCGGTTTGGGGCCAACTGAGGACGATTTGACCAAACAAACC
CTGGCTAAATTCTTAGGGAAAAAATTAGTCTTCGATCCTCAGGCACAGGCGAAGTTGGATGTCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAATGAAAGACAAGCTCAACTTGTAGAAGGGGCGACTCCGCTGCCAAATGAAACAGGAC
TGGCTGTGGGAGGAATATTGGAAGTCGAAGGAGTGACCTACGTCGTCCTTCCAGGTCCACCAAGTGAATTGAAGCCTATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGCATTCCCGAGTTCTTCGTTTCTTTGGGATTGGCGA
GAGCCAGTTGGTTACGATTTTGTCTGATTTGATTGATAATCAAACAGATCCGACCTTGGCCCCTTATGCTAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAAGCTAGCAGCCAAGAAGAGGCGAATCAAGTGCTGGATATCTTGGAAAATCAAATC
TTAGGTCGCCAGACCTTTGAAGGTCTTTCTTTACGAGATCTTTGTTATGGTTATGGGGAAGAAACTAGTTTAGCTAGCAT
TGTGGTAGAAGAACTGAAAAAACAAGGGAAAACTATCACGGCTGCAGAGAGTTTGACGGCAGGGCTTTTCCAAGCCAGCG
TAGCTGATTTTTCGGGTGCTTCAAGTATATTTAAGGGTGGTTTTGTAACCTATAGCTTGGAGGAAAAATCAAAGATGTTG
GATATTTCTGTCAAGGATTTGGAAGAACAGGGTGTGGTATCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAT
CAAGACCCAGTCTGATTTTGGCCTTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTGGAAGGACATCCAGCTGGGACAG
TCTTCATAGGCTTGGCTCAAGAGCAAGGAACTGAGGTTATCAAGGTCAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

97.847

100

0.978
  cinA Streptococcus mitis SK321

96.89

100

0.969
  cinA Streptococcus pneumoniae TIGR4

92.105

100

0.921
  cinA Streptococcus pneumoniae Rx1

91.866

100

0.919
  cinA Streptococcus pneumoniae R6

91.866

100

0.919
  cinA Streptococcus pneumoniae D39

91.627

100

0.916
  cinA Streptococcus mutans UA159

70.813

100

0.708
  cinA Streptococcus suis isolate S10

54.327

99.522

0.541
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

100

0.462

Multiple sequence alignment