Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   ABKJ27_RS01245 Genome accession   NZ_CP157578
Coordinates   248175..248804 (+) Length   209 a.a.
NCBI ID   WP_261122149.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 243175..253804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01235 (ABKJ27_01240) rpoC 243834..247511 (+) 3678 WP_000228741.1 DNA-directed RNA polymerase subunit beta' -
  ABKJ27_RS01240 (ABKJ27_01245) ndk 247620..248042 (+) 423 WP_247932099.1 nucleoside-diphosphate kinase -
  ABKJ27_RS01245 (ABKJ27_01250) comM 248175..248804 (+) 630 WP_261122149.1 competence protein Regulator
  ABKJ27_RS01250 (ABKJ27_01255) tsaE 248900..249343 (+) 444 WP_214614811.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABKJ27_RS01255 (ABKJ27_01260) - 249333..249851 (+) 519 WP_261047892.1 GNAT family N-acetyltransferase -
  ABKJ27_RS01260 (ABKJ27_01265) brpA 249859..250914 (+) 1056 WP_004256717.1 biofilm formation/cell division transcriptional regulator BrpA -
  ABKJ27_RS01265 (ABKJ27_01270) cinA 250992..252248 (+) 1257 WP_049516122.1 competence/damage-inducible protein A Machinery gene
  ABKJ27_RS01270 (ABKJ27_01275) recA 252303..253469 (+) 1167 WP_238095613.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 9.4983

>NTDB_id=1007435 ABKJ27_RS01245 WP_261122149.1 248175..248804(+) (comM) [Streptococcus sp. KHUD_011]
MEKMKKQIRVLLLFTIFGISSCSCLSLSTWALMLNQNCFYYLVGMLLLASIGAGINYYSGQRNQSYSVFKEDKQQFLYSL
LLLVNILGLALIVIEHILAGNTSVEGFVEAFLPSFFFLFGIDLLVFLPIKKYVNGVKKFLGKKEICFISGLAILIFLRNP
WMLLSMTFYIALGMLFLGLLVPKVIRWEVSFYSHLMRDILLVVFLLFLF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1007435 ABKJ27_RS01245 WP_261122149.1 248175..248804(+) (comM) [Streptococcus sp. KHUD_011]
ATGGAAAAAATGAAAAAGCAAATTCGTGTTTTGTTATTGTTTACGATTTTTGGTATTAGTAGCTGTTCTTGTTTAAGTTT
ATCGACTTGGGCCTTGATGTTAAATCAAAACTGCTTCTATTATCTAGTTGGCATGTTGCTCCTTGCCAGTATTGGGGCAG
GGATAAACTACTATAGTGGACAGCGAAATCAATCTTACTCAGTTTTTAAGGAAGATAAGCAACAATTCTTGTATAGTCTC
TTGCTCTTAGTAAATATTTTGGGTTTAGCTTTAATTGTCATAGAACATATCCTTGCAGGAAATACATCCGTAGAAGGATT
TGTGGAAGCCTTTCTTCCGAGTTTCTTTTTCTTATTTGGCATTGATTTGTTAGTTTTTCTGCCGATTAAGAAGTATGTAA
ATGGAGTGAAAAAGTTTTTGGGAAAGAAGGAAATCTGTTTTATTAGTGGACTAGCTATTCTAATCTTTCTCAGAAATCCT
TGGATGCTATTATCCATGACCTTTTATATTGCCTTGGGAATGCTTTTTCTAGGACTGTTGGTGCCAAAAGTCATTCGCTG
GGAAGTTTCATTTTACAGTCATTTGATGAGGGATATCTTGTTAGTCGTTTTCTTGCTGTTTCTATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus mitis SK321

96.172

100

0.962
  comM Streptococcus mitis NCTC 12261

95.98

95.215

0.914
  comM Streptococcus pneumoniae D39

39.512

98.086

0.388
  comM Streptococcus pneumoniae R6

39.512

98.086

0.388
  comM Streptococcus pneumoniae TIGR4

39.512

98.086

0.388

Multiple sequence alignment