Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00530  |
| T6SS type | Type i1 |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon (RefSeq) | chromosome II (NC_016628) |
| Location | 1232863..1256775 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | TssA | TssB | TssC | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM | VasH |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VFU_RS20980 (dmeF) | 1228279..1229184 | + | 906 | WP_041943455.1 | CDF family Co(II)/Ni(II) efflux transporter DmeF | ||
| VFU_RS20985 | 1229195..1229611 | + | 417 | WP_004727200.1 | MarR family transcriptional regulator | ||
| VFU_RS20990 | 1229619..1230206 | - | 588 | WP_004727199.1 | LysE family translocator | ||
| VFU_RS20995 | 1230316..1230759 | + | 444 | WP_014257992.1 | Lrp/AsnC family transcriptional regulator | ||
| T6CP011967 | PAAR | VFU_RS21000 | 1231183..1231467 | + | 285 | WP_004727197.1 | type VI secretion system PAAR protein |
| VFU_RS21005 | 1231451..1232458 | + | 1008 | WP_004727196.1 | sel1 repeat family protein | ||
| T6CP005619 | TssB | VFU_RS21010 (tssB) | 1232863..1233372 | + | 510 | WP_004727195.1 | type VI secretion system contractile sheath small subunit |
| T6CP005620 | TssC | VFU_RS21015 (tssC) | 1233419..1234894 | + | 1476 | WP_004727194.1 | type VI secretion system contractile sheath large subunit |
| T6CP008958 | TssE | VFU_RS21020 (tssE) | 1234897..1235334 | + | 438 | WP_004727193.1 | type VI secretion system baseplate subunit TssE |
| T6CP005621 | TssF | VFU_RS21025 (tssF) | 1235340..1237109 | + | 1770 | WP_014257993.1 | type VI secretion system baseplate subunit TssF |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0001 | vfu_A02134 (ihfA) | protein | Transcription regulator | Vibrio furnissii NCTC 11218 | chromosome (NC_016602) | 2226951..2227244 (-) | 490864172 | tssD2_a promoter (↓); VflT6SS2 major cluster promoter (↓) |
| REG0002 | vfu_A02422 (ihfB) | protein | Transcription regulator | Vibrio furnissii NCTC 11218 | chromosome (NC_016602) | 2516092..2516376 (-) | 490864456 | tssD2_a promoter (↓); VflT6SS2 major cluster promoter (↓) |
Showing 1 to 2 of 2 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||