Detailed information of component protein


Summary

Component ID T6CP005621
Component protein type TssF
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21025
Coordinate (Strand) 1235340..1237109 (+)
NCBI ID WP_014257993.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.8e-156 5..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 590 a.a.    

>T6CP005621 NC_016628:1235340-1237109 [Vibrio furnissii NCTC 11218] [TssF]
MTQDKYFREELAFLKEQGREFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLR
PVPSMSVVAFTPDKSVSERQTIARGTQLDSKPVFGTKCHFRTCRDVALYPLHCLDANAEHTREATIIKLTMKMNGDISIG
DAELGDLRFYLGGDKYSSQMLYLWLNHYLEKVSVEVNGAVFTLPRNAFATVGFHSDESLLPYPTNVYEGYRILQEYLSFP
EAFHFFDLKGLGQALPKSVHGEFTLHIHLSKTLPADVRVRKDNFQLYCTPVINLFEHDADPIDLNGRKSEYRIVPSSRYP
AHYEVFSVDSVVGWQDNSQAGQRVRGEKRVYSSFESFQHEVERVRHRQALYYRTRIKESIRGDGFDSFVSFIRGDETLSV
DVDEAVSIKLTCTNRLLPLELGVGDICEPTDTSPPYATFRNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSC
VLRAYDFRALVDRQAERVARLRMDGISKIESQPVDKMLRGLPVRGLQSTLYIDQAGFGSEGDLYLFGTVLSHFFALYASI
NSFHELVVINVSNQEKYTWGTQTGMQPLI*

  Nucleotide sequence: 1770 bp    

>T6CP005621 NC_016628:1235340-1237109 [Vibrio furnissii NCTC 11218] [TssF]
ATGACTCAAGACAAGTATTTCAGGGAAGAGCTCGCTTTTCTTAAAGAGCAGGGGAGAGAATTTACCGAAATTCACCCTCA
GCTGTCGCGCTTTCTGCATGGCAGAACAACCGACCCAGACGTAGAGCGTCTGTTGGAAGGCTTTGCGTTCCTGACTGCGC
GTCTGCGTGAAAAAGTCGAAGATGAGTTCCCTGAACTGACGCACTCGATCATCAATATGCTGTGGCCGAACTATTTGCGG
CCTGTGCCGAGCATGAGCGTGGTGGCCTTTACACCGGACAAAAGTGTCAGTGAAAGACAGACGATTGCTCGCGGCACTCA
ACTGGATAGCAAACCGGTGTTTGGCACCAAGTGTCATTTTCGAACCTGCCGCGATGTGGCGCTCTATCCGCTTCATTGTC
TGGATGCCAACGCGGAACACACGCGTGAAGCCACCATCATTAAGCTGACAATGAAGATGAACGGCGACATTTCAATTGGT
GATGCTGAGCTGGGTGATTTGCGTTTTTACCTCGGCGGAGACAAGTACAGTTCGCAAATGTTGTATCTGTGGCTCAATCA
CTATTTGGAAAAAGTCAGTGTTGAAGTGAATGGGGCCGTCTTTACGCTGCCGCGCAATGCGTTTGCAACCGTGGGCTTTC
ACAGCGACGAATCGTTATTGCCTTACCCAACCAATGTTTACGAAGGTTACCGCATTTTGCAGGAGTACCTGTCATTTCCG
GAAGCATTCCACTTTTTTGATCTCAAGGGTTTGGGGCAAGCGCTGCCAAAATCGGTGCACGGTGAATTCACGTTGCACAT
CCATTTATCCAAAACATTACCCGCTGATGTGCGTGTGCGCAAAGACAACTTTCAGCTCTATTGCACACCAGTGATCAACC
TCTTCGAGCACGATGCTGACCCCATCGACCTCAATGGTCGTAAATCGGAATACCGCATTGTGCCATCCAGCCGCTATCCG
GCGCATTACGAAGTGTTTAGCGTCGACAGCGTGGTGGGTTGGCAGGACAACAGCCAAGCGGGTCAACGAGTACGTGGCGA
GAAGCGTGTGTACTCCTCGTTTGAAAGCTTTCAACACGAAGTTGAACGTGTTCGTCATCGTCAGGCGTTGTATTACCGCA
CACGGATTAAAGAAAGCATTCGCGGTGACGGCTTTGACTCATTTGTGTCCTTTATTCGCGGCGATGAAACCCTGTCGGTT
GATGTGGATGAAGCGGTGTCCATCAAACTGACCTGCACCAACCGTTTGTTACCGTTGGAGCTGGGTGTGGGCGACATTTG
TGAGCCAACCGACACCTCGCCGCCGTACGCGACGTTTCGCAACATCACCGTGCCGTCGCAGTCGCTGCGTCCGGTGCTCG
ATGGCAGCCTGCTGTGGACGCTGATTTCCAACTTGTCACTCAACTACTTGTCGTTGCTATCCAAAGATGCGCTTAGCTGT
GTGCTGCGGGCTTACGATTTCCGCGCGTTGGTGGATCGCCAAGCTGAGCGTGTGGCGCGTCTGCGCATGGATGGCATCAG
TAAAATCGAATCGCAACCGGTAGACAAAATGCTGCGCGGCTTACCCGTACGCGGCCTGCAATCGACCCTTTACATTGATC
AAGCAGGGTTTGGTTCGGAAGGTGATTTGTATCTGTTTGGCACGGTGCTGAGTCATTTCTTTGCGCTCTACGCCAGTATC
AATTCGTTTCACGAATTGGTCGTCATCAACGTGAGTAACCAAGAGAAGTACACATGGGGAACACAGACCGGAATGCAGCC
GTTGATATGA