Detailed information of regulator


Summary

Regulator ID REG0001 experimental
Regulator type protein
Regulatory pathway (from literatures) Transcription regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00529 insolico (Type i5); T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome
Sequence Protein sequence (98 a.a.); Nucleotide sequence (294 bp)
Description IHF Positively Regulates V. fluvialis VflT6SS and there are direct binding of IHF on tssD2_a promoter and VflT6SS2 major cluster promoter.GeneID of Ihf and primer designation are based on the sequence of V.furnissii NCTC11218.
Reference

External database links

Locus tag (Gene) vfu_A02134 (ihfA)
Coordinates (Strand) 2226951..2227244 (-)
NCBI ID 490864172
RefSeq NC_016602
Uniprot ID S7JLN1_VIBFL, A0A0Q2M9B4_VIBFU, A0A0X8LMF2_VIBFL
KEGG ID vfl:AL536_14390
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
tssD2_a promoter TAACTAATTGATT The IHF binding sites and the conserved bases in E. coli are indicated with red
VflT6SS2 major cluster promoter -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Bac_DNA_binding PF00216.23 5.7e-31 3..91

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-97 MALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQKLKARVENIKKS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9901 - -



  Protein sequence of regulator: 98 a.a.    .

>REG0001 NC_016602:c2227244-2226951 [Vibrio furnissii NCTC 11218]
MALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVT
FRPGQKLKARVENIKKS*

  Nucleotide sequence of regulator: 294 bp    .

>REG0001 NC_016602:c2227244-2226951 [Vibrio furnissii NCTC 11218]
ATGGCGCTCACAAAGGCCGATTTGGCTGAGAACCTGTTTGAAAAACTAGGGTTTAGTAAACGGGATGCCAAGGAAACGGT
TGAAGTGTTTTTTGAAGAAATTCGCAAAGCACTCGAAGGTGGCGAACAGGTAAAACTCTCCGGTTTTGGTAATTTTGATC
TGCGAGACAAAAACGAACGTCCGGGTCGAAATCCAAAAACGGGTGAAGATATTCCGATCACCGCTCGACGTGTCGTAACG
TTCCGCCCAGGGCAAAAACTAAAAGCCCGAGTCGAGAACATTAAAAAGTCGTAA