Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00529  |
| T6SS type | Type i5 |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon (RefSeq) | chromosome II (NC_016628) |
| Location | 808587..832165 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | TssA | TssB | TssC | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VFU_RS19110 | 803889..804182 | - | 294 | WP_004727586.1 | hypothetical protein | ||
| VFU_RS19115 | 804418..805266 | + | 849 | WP_014257716.1 | pirin family protein | ||
| VFU_RS19120 | 805426..806112 | - | 687 | WP_014257717.1 | response regulator | ||
| VFU_RS23920 | 806392..807249 | - | 858 | WP_202944803.1 | HAMP domain-containing protein | ||
| VFU_RS23925 | 807188..807793 | - | 606 | WP_014257719.1 | hypothetical protein | ||
| VFU_RS19130 | 807787..808509 | - | 723 | WP_041943437.1 | protein kinase family protein | ||
| T6CP005606 | TssM | VFU_RS19135 (tssM) | 808587..811997 | - | 3411 | WP_014257721.1 | type VI secretion system membrane subunit TssM |
| T6CP005607 | TssL | VFU_RS19140 (icmH) | 812010..813227 | - | 1218 | WP_014257722.1 | type IVB secretion system protein IcmH/DotU |
| T6CP005608 | TssK | VFU_RS19145 (tssK) | 813232..814521 | - | 1290 | WP_014257723.1 | type VI secretion system baseplate subunit TssK |
| T6CP005609 | TssJ | VFU_RS19150 (tssJ) | 814568..815083 | - | 516 | WP_004727578.1 | type VI secretion system lipoprotein TssJ |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0001 | vfu_A02134 (ihfA) | protein | Transcription regulator | Vibrio furnissii NCTC 11218 | chromosome (NC_016602) | 2226951..2227244 (-) | 490864172 | tssD2_a promoter (↓); VflT6SS2 major cluster promoter (↓) |
| REG0002 | vfu_A02422 (ihfB) | protein | Transcription regulator | Vibrio furnissii NCTC 11218 | chromosome (NC_016602) | 2516092..2516376 (-) | 490864456 | tssD2_a promoter (↓); VflT6SS2 major cluster promoter (↓) |
Showing 1 to 2 of 2 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||