Detailed information of component protein


Summary

Component ID T6CP005612
Component protein type TssG
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (342 a.a.); Nucleotide sequence (1026 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19170
Coordinate (Strand) 819393..820418 (-)
NCBI ID WP_004727574.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 9.7e-51 17..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 342 a.a.    

>T6CP005612 NC_016628:c820418-819393 [Vibrio furnissii NCTC 11218] [TssG]
MSLSARQTVKQHLLTHPHEFDFVQVIRLLQAISQQESLSVRLQSDPMPHGAPTEVTRIEKEHDEVRVQLGLEALSGCKGV
IPDYLYAEMLHSLHQDDRALQRFLDVFNQRYYELKAYVESAANLMLREEREAASRYALSRLTQKQALACMFSLPMQRGQK
VDQSVLRYGLALASRNRNLAQLKRLLCDYFDLDITPKVVPSAVYRIRNQDQTRIGGHRGQNHRLGRGMVMGRQGNQAYQT
LEIWITPRNRNEFIGLERNRHFARSLKSLVQSYLRESLETRLYLYVKREYINAPVISAVAGGVRLGEASCLSPQRRAADY
RKILLQSENVYVTGKTGQPGQ*

  Nucleotide sequence: 1026 bp    

>T6CP005612 NC_016628:c820418-819393 [Vibrio furnissii NCTC 11218] [TssG]
ATGTCTCTGAGCGCGCGCCAGACGGTCAAACAGCATTTGCTGACTCACCCGCATGAATTTGATTTTGTGCAGGTGATTCG
TCTGTTGCAGGCGATCAGCCAACAAGAATCGCTGTCGGTGCGTTTGCAATCGGATCCGATGCCGCATGGCGCGCCGACTG
AAGTCACGCGTATCGAAAAAGAGCATGACGAAGTACGTGTTCAGCTTGGCTTGGAAGCATTGTCCGGTTGCAAAGGGGTC
ATTCCCGATTATCTGTATGCAGAAATGCTGCATAGTCTGCATCAGGATGATCGCGCGCTACAGCGCTTTCTGGATGTGTT
TAACCAGCGTTATTACGAACTCAAAGCCTATGTGGAAAGCGCTGCGAACCTGATGCTGCGCGAGGAGCGCGAAGCGGCGT
CTCGTTATGCGCTGTCACGCCTGACTCAGAAGCAGGCGTTGGCCTGTATGTTCTCGCTGCCCATGCAGCGCGGGCAGAAA
GTCGATCAGAGTGTGCTGCGTTATGGTCTGGCTCTCGCGTCCCGCAACCGCAACCTGGCGCAACTCAAGCGTCTTCTGTG
TGACTATTTCGACCTCGATATCACCCCCAAAGTGGTGCCTTCGGCGGTTTATCGCATTCGCAATCAGGACCAAACCCGTA
TCGGCGGTCACCGTGGTCAGAACCACCGTCTTGGCCGTGGCATGGTCATGGGCCGTCAGGGCAATCAGGCCTACCAGACG
CTGGAAATCTGGATCACGCCGCGCAACCGCAATGAATTTATTGGCTTAGAACGCAATCGTCACTTTGCCCGTTCACTGAA
ATCTCTGGTGCAGTCCTACTTGCGTGAAAGTCTGGAAACGCGCCTGTACCTGTATGTGAAACGTGAATACATCAACGCCC
CGGTGATATCGGCCGTGGCTGGCGGCGTTCGCCTAGGCGAAGCCAGCTGTCTTTCCCCGCAGCGTCGCGCTGCGGATTAT
CGGAAAATATTATTACAATCGGAGAACGTCTATGTCACAGGTAAAACTGGGCAACCTGGTCAGTAA