Detailed information of component protein
Summary
| Component ID | T6CP005617 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS00529  (Type i5) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (445 a.a.); Nucleotide sequence (1335 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS19205 |
| Coordinate (Strand) | 826729..828063 (-) |
| NCBI ID | WP_014257731.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 4.9e-24 | 6..152 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 445 a.a.
>T6CP005617 NC_016628:c828063-826729 [Vibrio furnissii NCTC 11218] [TssA]
MFEHLLNPISDEHPSGEYLKDNRTLYRTYRNAFNVAQSSFRQLVETPDAMQDAVVVHTNAENWDALAKLCESCLSEQSKD
VEIYSWFTMAQLFSASPLESLAQALHTLEQMIEHFWDSLQPTLPENKRKADGDAEQRKEVAEHRVKPLLQLVGDSAESGL
LYMPLQMLPLVGDIDYGRFFAAEKSGSLPQLKAAALADFSREKADVEARILALGASKDALHALETTLQQKCAAAGTQSIN
FRFVKEAVERLINAIHFLVGDQFARWPLDAAMTDAETPQAASEQTMAAVDSQSSEFAPTESAHQLTQGQSQPIMAQTAAP
MAVPVASQEALASREQAFAELQRIADYFLATEPHSPIYLLLKRAIRWGGMSLPELLEELVGDNNAVQQRIEQLAGLESAQ
HQASRAAAPVATAPQMTMPEAAPSVSPTSSTTNGSDSGLSAIEW*
MFEHLLNPISDEHPSGEYLKDNRTLYRTYRNAFNVAQSSFRQLVETPDAMQDAVVVHTNAENWDALAKLCESCLSEQSKD
VEIYSWFTMAQLFSASPLESLAQALHTLEQMIEHFWDSLQPTLPENKRKADGDAEQRKEVAEHRVKPLLQLVGDSAESGL
LYMPLQMLPLVGDIDYGRFFAAEKSGSLPQLKAAALADFSREKADVEARILALGASKDALHALETTLQQKCAAAGTQSIN
FRFVKEAVERLINAIHFLVGDQFARWPLDAAMTDAETPQAASEQTMAAVDSQSSEFAPTESAHQLTQGQSQPIMAQTAAP
MAVPVASQEALASREQAFAELQRIADYFLATEPHSPIYLLLKRAIRWGGMSLPELLEELVGDNNAVQQRIEQLAGLESAQ
HQASRAAAPVATAPQMTMPEAAPSVSPTSSTTNGSDSGLSAIEW*
Nucleotide sequence: 1335 bp
>T6CP005617 NC_016628:c828063-826729 [Vibrio furnissii NCTC 11218] [TssA]
ATGTTTGAACATCTGCTCAACCCGATATCTGACGAACACCCGAGTGGCGAATATCTCAAAGATAATCGCACCTTGTATCG
CACCTACCGGAATGCATTCAACGTTGCACAATCCTCGTTTCGCCAACTGGTAGAAACACCGGATGCAATGCAGGACGCGG
TGGTGGTCCACACCAACGCGGAGAACTGGGATGCCTTGGCCAAATTGTGTGAAAGCTGTCTGTCTGAGCAGTCCAAAGAT
GTCGAAATCTACTCTTGGTTCACCATGGCGCAGCTCTTTTCTGCCTCGCCTCTAGAATCCTTGGCGCAGGCGCTCCATAC
GCTGGAGCAGATGATTGAGCATTTCTGGGACTCACTCCAACCCACACTGCCGGAGAACAAACGCAAAGCAGACGGCGACG
CCGAACAGCGCAAAGAAGTGGCGGAACACCGCGTGAAGCCGCTGCTGCAACTGGTTGGCGATTCCGCTGAAAGTGGCTTG
CTGTACATGCCGCTGCAAATGCTGCCTCTGGTCGGCGACATTGATTATGGCCGTTTCTTTGCGGCAGAAAAATCGGGTTC
GTTGCCGCAGTTGAAAGCAGCCGCGCTGGCGGATTTTTCTCGTGAGAAGGCGGACGTGGAAGCGCGCATTCTGGCACTCG
GTGCAAGTAAAGATGCGTTGCATGCGCTGGAAACCACGCTGCAGCAGAAATGTGCGGCGGCCGGTACCCAGTCGATTAAT
TTTCGCTTTGTGAAAGAGGCGGTCGAACGCCTGATCAACGCGATTCATTTTCTGGTGGGCGATCAATTTGCCCGTTGGCC
TCTGGACGCGGCGATGACTGACGCTGAAACGCCACAAGCCGCGTCTGAGCAAACCATGGCCGCGGTTGACTCTCAATCCT
CTGAATTTGCGCCAACTGAATCTGCCCATCAGCTAACGCAGGGTCAGTCACAACCTATCATGGCGCAAACTGCGGCGCCG
ATGGCAGTACCTGTGGCATCTCAGGAGGCGCTGGCGTCACGTGAACAGGCATTTGCCGAACTGCAACGCATTGCGGACTA
CTTTCTCGCCACCGAACCCCACAGCCCGATCTATCTGTTGCTGAAACGCGCGATTCGTTGGGGGGGGATGTCTCTGCCTG
AGCTGTTGGAAGAGCTGGTGGGCGACAACAACGCGGTGCAGCAACGCATTGAACAATTGGCCGGTCTGGAAAGCGCGCAG
CATCAGGCAAGCCGAGCGGCGGCGCCCGTTGCCACTGCACCACAAATGACGATGCCGGAGGCTGCGCCTTCGGTATCTCC
GACTTCATCGACGACAAACGGCAGCGACAGCGGTCTGTCAGCGATTGAATGGTAG
ATGTTTGAACATCTGCTCAACCCGATATCTGACGAACACCCGAGTGGCGAATATCTCAAAGATAATCGCACCTTGTATCG
CACCTACCGGAATGCATTCAACGTTGCACAATCCTCGTTTCGCCAACTGGTAGAAACACCGGATGCAATGCAGGACGCGG
TGGTGGTCCACACCAACGCGGAGAACTGGGATGCCTTGGCCAAATTGTGTGAAAGCTGTCTGTCTGAGCAGTCCAAAGAT
GTCGAAATCTACTCTTGGTTCACCATGGCGCAGCTCTTTTCTGCCTCGCCTCTAGAATCCTTGGCGCAGGCGCTCCATAC
GCTGGAGCAGATGATTGAGCATTTCTGGGACTCACTCCAACCCACACTGCCGGAGAACAAACGCAAAGCAGACGGCGACG
CCGAACAGCGCAAAGAAGTGGCGGAACACCGCGTGAAGCCGCTGCTGCAACTGGTTGGCGATTCCGCTGAAAGTGGCTTG
CTGTACATGCCGCTGCAAATGCTGCCTCTGGTCGGCGACATTGATTATGGCCGTTTCTTTGCGGCAGAAAAATCGGGTTC
GTTGCCGCAGTTGAAAGCAGCCGCGCTGGCGGATTTTTCTCGTGAGAAGGCGGACGTGGAAGCGCGCATTCTGGCACTCG
GTGCAAGTAAAGATGCGTTGCATGCGCTGGAAACCACGCTGCAGCAGAAATGTGCGGCGGCCGGTACCCAGTCGATTAAT
TTTCGCTTTGTGAAAGAGGCGGTCGAACGCCTGATCAACGCGATTCATTTTCTGGTGGGCGATCAATTTGCCCGTTGGCC
TCTGGACGCGGCGATGACTGACGCTGAAACGCCACAAGCCGCGTCTGAGCAAACCATGGCCGCGGTTGACTCTCAATCCT
CTGAATTTGCGCCAACTGAATCTGCCCATCAGCTAACGCAGGGTCAGTCACAACCTATCATGGCGCAAACTGCGGCGCCG
ATGGCAGTACCTGTGGCATCTCAGGAGGCGCTGGCGTCACGTGAACAGGCATTTGCCGAACTGCAACGCATTGCGGACTA
CTTTCTCGCCACCGAACCCCACAGCCCGATCTATCTGTTGCTGAAACGCGCGATTCGTTGGGGGGGGATGTCTCTGCCTG
AGCTGTTGGAAGAGCTGGTGGGCGACAACAACGCGGTGCAGCAACGCATTGAACAATTGGCCGGTCTGGAAAGCGCGCAG
CATCAGGCAAGCCGAGCGGCGGCGCCCGTTGCCACTGCACCACAAATGACGATGCCGGAGGCTGCGCCTTCGGTATCTCC
GACTTCATCGACGACAAACGGCAGCGACAGCGGTCTGTCAGCGATTGAATGGTAG