Detailed information of component protein
Summary
| Component ID | T6CP005609 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00529  (Type i5) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS19150 |
| Coordinate (Strand) | 814568..815083 (-) |
| NCBI ID | WP_004727578.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 3.5e-28 | 37..154 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 172 a.a.
>T6CP005609 NC_016628:c815083-814568 [Vibrio furnissii NCTC 11218] [TssJ]
MSWLNRIRLAAIGCCALVLSACSSSSSTTTFAPTLKVPLVVEASKDINVFDDEQARPVVVRVYQLQDAGNFQKADFISLY
NADQSVLADSLVDLQTLAPVLPGELRNLTLDVQQQSRFIAVLVEFAHYETATAKAYLALVSEPEEYPVYIHITKQKVELT
QPVSKSWWNVF*
MSWLNRIRLAAIGCCALVLSACSSSSSTTTFAPTLKVPLVVEASKDINVFDDEQARPVVVRVYQLQDAGNFQKADFISLY
NADQSVLADSLVDLQTLAPVLPGELRNLTLDVQQQSRFIAVLVEFAHYETATAKAYLALVSEPEEYPVYIHITKQKVELT
QPVSKSWWNVF*
Nucleotide sequence: 516 bp
>T6CP005609 NC_016628:c815083-814568 [Vibrio furnissii NCTC 11218] [TssJ]
ATGAGCTGGCTGAATAGGATTCGTCTGGCCGCAATCGGCTGCTGCGCGTTGGTGCTGAGTGCTTGTAGCTCAAGCAGTTC
AACCACCACGTTTGCCCCCACACTCAAAGTGCCGCTGGTGGTTGAAGCGAGTAAAGACATCAATGTGTTTGATGATGAAC
AAGCGCGACCGGTGGTCGTGCGCGTGTATCAGCTGCAGGATGCCGGCAATTTCCAGAAAGCCGATTTCATCAGCCTGTAC
AACGCGGATCAGAGCGTGCTGGCCGATTCGCTGGTGGATTTGCAGACACTCGCGCCAGTCCTGCCGGGAGAGCTGCGCAA
CCTGACCTTGGATGTCCAGCAACAAAGCCGATTTATCGCCGTATTGGTCGAATTTGCCCATTACGAAACCGCGACCGCCA
AAGCGTATCTGGCGCTGGTGAGCGAACCCGAAGAGTACCCAGTTTATATCCACATCACCAAGCAGAAGGTTGAGCTGACT
CAACCGGTCAGCAAGTCGTGGTGGAACGTGTTTTAA
ATGAGCTGGCTGAATAGGATTCGTCTGGCCGCAATCGGCTGCTGCGCGTTGGTGCTGAGTGCTTGTAGCTCAAGCAGTTC
AACCACCACGTTTGCCCCCACACTCAAAGTGCCGCTGGTGGTTGAAGCGAGTAAAGACATCAATGTGTTTGATGATGAAC
AAGCGCGACCGGTGGTCGTGCGCGTGTATCAGCTGCAGGATGCCGGCAATTTCCAGAAAGCCGATTTCATCAGCCTGTAC
AACGCGGATCAGAGCGTGCTGGCCGATTCGCTGGTGGATTTGCAGACACTCGCGCCAGTCCTGCCGGGAGAGCTGCGCAA
CCTGACCTTGGATGTCCAGCAACAAAGCCGATTTATCGCCGTATTGGTCGAATTTGCCCATTACGAAACCGCGACCGCCA
AAGCGTATCTGGCGCTGGTGAGCGAACCCGAAGAGTACCCAGTTTATATCCACATCACCAAGCAGAAGGTTGAGCTGACT
CAACCGGTCAGCAAGTCGTGGTGGAACGTGTTTTAA