Detailed information of component protein


Summary

Component ID T6CP005618
Component protein type TssI
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (688 a.a.); Nucleotide sequence (2064 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19225
Coordinate (Strand) 830102..832165 (-)
NCBI ID WP_014257734.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.2e-47 30..336
Phage_base_V PF04717.14 1.3e-17 384..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 688 a.a.    

>T6CP005618 NC_016628:c832165-830102 [Vibrio furnissii NCTC 11218] [TssI]
MNELIDAQGSYLVVQDANGNEFVASTLSVTEQINQHYEWQADIIVSDSSPADWIGTEVSCSVYNVIGDSRTSLRQYQGYV
VKAQAQSQRIDSSYYGIKLTVQPWLFLLKHSRQCRVFQEQTAQDIVTSIFDELGFSGQYTVNSMPSTSREYCVQFGESDF
EFVTRLLAEDGVHFYFGKDANAAKLYLQEAQMSFEQSDMATLDYAAAPSGDYDVLETWQREYAFHSASLEIAGYDYSQSK
VVTSGAKASSYAVSGNTKLKEYRYPTASITNDSSSLTSTLGTLQRGQLDSGYDRVHAKTPSADLCVGQYLKLAAHSDSAE
EGNYLVTELHYQFENQKGNAFSAQAELVCVPEDQVFYPPAKARPILHGLQSAVVAGSTESEPASDTSGRVRIKFHWDDET
GDKTSCWVRVAQGMAGSGYGMQFLPRAGQEVLVSFINGDPDQPVVVASVYNSTNTPPYPTENTTESGVKTKLAGESNELR
FDDKKDNELLYLHAAKDFTSEVVNDHSETVGGEMTLAVTKNLTETIEQSHSLSAKEGITLTTEKSYALTVTESITQDGKD
ITLTGSDSLTLKVGDSSIVMSSDKIEISSSTIALTADSAISLSGGDISQSGDSISLDSDGSLSASSGSSMSLSAGSSFTA
SASSSATVSGLNATLSADVTATVSGSATAELSSDGQASISGTLVMVN*

  Nucleotide sequence: 2064 bp    

>T6CP005618 NC_016628:c832165-830102 [Vibrio furnissii NCTC 11218] [TssI]
ATGAATGAATTGATTGATGCGCAAGGCAGCTATCTGGTGGTTCAGGACGCCAACGGCAATGAGTTTGTGGCTTCAACCCT
GAGTGTGACTGAGCAGATCAACCAGCACTATGAGTGGCAAGCCGACATCATCGTGTCGGATTCTTCGCCCGCGGATTGGA
TTGGCACTGAAGTCAGCTGCTCGGTCTACAACGTGATTGGCGATTCGCGCACTAGCCTGCGTCAGTACCAAGGCTATGTG
GTGAAAGCACAGGCTCAGTCGCAACGGATTGATTCCAGTTACTACGGCATCAAACTGACCGTTCAGCCATGGCTGTTCCT
GCTCAAGCATTCACGCCAGTGCCGCGTATTTCAGGAGCAAACCGCGCAGGACATCGTGACGTCCATTTTCGATGAGCTGG
GCTTTAGCGGTCAGTACACCGTCAACAGCATGCCATCGACCAGTCGTGAATATTGCGTGCAGTTCGGTGAGTCGGATTTT
GAGTTTGTCACGCGCTTACTTGCTGAAGATGGCGTGCATTTTTACTTCGGCAAAGATGCCAACGCGGCAAAGCTCTATCT
GCAGGAAGCGCAGATGTCGTTTGAACAAAGCGACATGGCGACGCTGGATTACGCCGCTGCGCCATCGGGTGATTACGACG
TGTTGGAGACGTGGCAGCGTGAGTATGCGTTTCACAGCGCCTCACTGGAAATTGCTGGTTACGACTACTCACAATCGAAA
GTGGTGACGAGTGGCGCCAAGGCGTCGAGCTACGCTGTTTCTGGCAACACCAAACTCAAAGAGTACCGTTATCCGACGGC
ATCGATCACCAATGATTCCAGTAGCCTGACCTCAACCCTTGGCACGCTGCAGCGTGGCCAGCTCGATTCTGGCTATGACC
GCGTTCACGCCAAGACACCATCGGCAGATTTGTGTGTCGGTCAGTATTTGAAACTGGCGGCGCATTCAGACAGTGCTGAA
GAAGGCAACTATCTGGTGACCGAGCTGCATTACCAGTTTGAAAACCAAAAAGGTAATGCGTTCAGCGCGCAAGCTGAGTT
GGTGTGTGTGCCAGAAGATCAGGTGTTCTATCCGCCCGCGAAAGCTCGGCCCATATTACACGGCCTGCAATCTGCGGTTG
TGGCGGGCAGTACCGAGAGTGAACCTGCCAGTGATACGTCGGGTCGCGTGCGGATCAAATTCCACTGGGATGATGAAACC
GGCGACAAAACCAGTTGCTGGGTTCGCGTTGCCCAAGGCATGGCTGGTAGCGGCTACGGCATGCAATTTCTGCCACGCGC
GGGTCAGGAAGTACTGGTGAGTTTTATCAACGGTGACCCGGATCAGCCCGTGGTGGTGGCGAGTGTCTATAACTCGACCA
ACACACCGCCATACCCAACGGAAAACACCACTGAAAGCGGCGTGAAAACCAAGCTGGCGGGCGAGTCAAACGAGCTGCGT
TTCGACGACAAGAAAGACAACGAGCTGCTGTATCTGCACGCCGCCAAGGATTTCACCAGTGAAGTTGTGAACGATCATAG
CGAAACCGTCGGTGGAGAAATGACCTTGGCGGTCACCAAGAACCTGACGGAAACCATTGAGCAGTCACACAGCTTGTCTG
CCAAAGAGGGCATCACGCTGACGACGGAAAAATCGTATGCGCTGACGGTGACTGAGTCGATCACGCAAGACGGCAAAGAC
ATCACCCTCACGGGCAGTGATTCACTGACCTTAAAAGTGGGTGACAGCAGCATTGTGATGAGCAGCGACAAGATTGAGAT
TTCCAGCAGCACCATCGCGTTAACCGCGGATTCTGCCATTTCTCTGTCGGGTGGCGACATCAGTCAATCGGGTGATTCGA
TCAGTCTCGATTCCGATGGGTCTTTGAGCGCGTCGTCGGGCAGTTCGATGTCTCTGAGTGCGGGCAGCAGCTTTACCGCG
TCCGCCAGCAGTTCGGCCACCGTGTCTGGCCTCAACGCGACACTGAGCGCAGATGTCACCGCGACCGTGTCGGGCAGTGC
GACGGCGGAACTGAGTTCTGATGGTCAGGCGTCTATCAGCGGCACATTGGTGATGGTGAACTAA