Detailed information of component protein


Summary

Component ID T6CP005608
Component protein type TssK
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (430 a.a.); Nucleotide sequence (1290 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19145
Coordinate (Strand) 813232..814521 (-)
NCBI ID WP_014257723.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.5e-101 7..428
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 430 a.a.    

>T6CP005608 NC_016628:c814521-813232 [Vibrio furnissii NCTC 11218] [TssK]
MFIAPQHFQQQDRHTHQYIQKYVALSSQGSGFGVSALELDHHYLKIGKFGVVHCQGIFPEGTLFDCVKELLLDIPEGTLN
QRVYLALPLSVEGENEYGSRADKRRYVVSQVNLFDASDVVQSAIEAELAEPNIRLVLEGEDVTGLALLPVAKVLERQENG
EVILDRSFIPACLHYGASQLLKERLKEIFILTQARANSVVQRIGAGQQTKSDLSLMREFLWLQTLNRWLPWLHLTLEQPQ
TSVDALYEGLVSFSAELDSFKPAMTAMPEPLVRDDLKQGFAGVFAQLREKLSMVQSDNVTEFSWDTNLFERRRLLRLSIP
NLNQIEGRRFVMAVHASIGTAALLQVFPSACTLSGLSQIADLVRNSQSGVPIQVLPVAPNELKAQADVAYFEIDTAHEYW
QQLKTKREPIALHVDSRVPDLSIKLYALG*

  Nucleotide sequence: 1290 bp    

>T6CP005608 NC_016628:c814521-813232 [Vibrio furnissii NCTC 11218] [TssK]
ATGTTTATCGCCCCGCAGCATTTTCAGCAGCAGGACCGCCATACGCATCAGTACATTCAGAAATATGTCGCCCTGTCTTC
ACAGGGCAGTGGTTTTGGTGTGTCGGCGCTGGAGCTTGATCATCATTACCTCAAAATCGGTAAGTTTGGCGTGGTGCATT
GCCAAGGGATTTTCCCAGAAGGGACGCTGTTTGATTGTGTCAAAGAGCTGCTGCTGGATATTCCGGAAGGTACCCTCAAC
CAACGCGTCTATCTGGCGTTGCCATTGTCGGTGGAAGGCGAAAATGAGTACGGCAGCCGTGCAGACAAGCGTCGTTACGT
GGTGTCACAGGTCAATCTGTTTGATGCCAGTGATGTGGTGCAGAGCGCAATTGAAGCTGAGCTCGCCGAGCCGAATATCC
GTCTGGTACTTGAAGGGGAAGACGTGACGGGGCTGGCGTTGCTGCCAGTGGCGAAAGTGTTGGAACGGCAGGAAAACGGA
GAGGTCATCCTTGATCGCAGCTTTATTCCGGCGTGTCTCCACTACGGCGCTTCGCAACTACTCAAAGAGCGTTTGAAAGA
GATTTTCATCCTGACGCAAGCCCGCGCCAACAGCGTCGTGCAACGCATTGGCGCGGGGCAGCAAACCAAAAGTGATCTGA
GCTTGATGCGCGAATTTCTGTGGTTACAGACGTTAAACCGCTGGCTGCCATGGCTGCATCTGACGCTTGAACAGCCACAG
ACCAGCGTGGACGCGTTGTATGAAGGGCTAGTGAGCTTTTCCGCTGAACTCGACAGCTTTAAACCAGCGATGACAGCCAT
GCCGGAACCGCTGGTGCGTGATGACCTCAAGCAGGGCTTTGCGGGCGTGTTCGCCCAACTGCGCGAGAAACTGTCGATGG
TTCAGAGCGACAACGTGACGGAATTCAGCTGGGATACCAACCTGTTCGAGCGTCGCCGCTTGCTGCGTTTGTCGATTCCG
AACCTCAATCAGATTGAAGGCCGCCGCTTTGTGATGGCGGTGCATGCATCGATTGGGACCGCGGCGTTGCTGCAGGTGTT
CCCGAGTGCGTGCACGCTGAGTGGGTTGAGCCAGATTGCCGACTTGGTGCGCAACAGTCAGTCCGGTGTGCCGATTCAGG
TGCTGCCGGTTGCGCCGAATGAACTGAAAGCGCAGGCGGATGTGGCCTATTTCGAAATCGATACCGCCCATGAGTACTGG
CAACAACTGAAAACCAAACGAGAGCCGATCGCGCTGCACGTCGACAGCCGTGTGCCGGATCTCTCCATTAAGCTCTACGC
CCTGGGTTGA