Detailed information of component protein
Summary
| Component ID | T6CP005615 |
| Component protein type | TssC |
| T6SS ID (Type) | T6SS00529  (Type i5) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (493 a.a.); Nucleotide sequence (1479 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS19190 |
| Coordinate (Strand) | 824049..825527 (-) |
| NCBI ID | WP_014257730.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VipB | PF05943.14 | 2.6e-116 | 64..371 |
| VipB_2 | PF18945.2 | 3.7e-37 | 381..490 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 493 a.a.
>T6CP005615 NC_016628:c825527-824049 [Vibrio furnissii NCTC 11218] [TssC]
MSTELENQVSPEAGTESLSLLDRAIAATNQTPADQTKELFSVLAEQALSGTVTWDKNLTKTIENAIAEIDKQMSRQLSAI
MQQDDFRRLEGSWRGLNKLVTESETGQSLKIKLVDFTKDELIEQFEDAPAVDRSPLFDALYQKEFGTAGGEPYGALIGDY
TFSHKDEDVALMRYMGETAAASHAPFIAAANPEMFEFDSFETFNEGKPVASGFDSPAYASWNAFRESDDSRYVVLTLPQT
LARLPYGDKGLGTKSFAYEELATDADGNPKPKNNAQLVWSNAAYELGLKMTQAHTQFGWCTAIRGLDNGGKVENLPNLTY
KSEAGDLMQQCPIEVNLTDEREKELSDLGFLPLVHYKNTNYGVFIGSQTAQKPKTYTDPDATGNAAISARLPYIMASSRI
AHYLKVMGRDMLGSNLEAADVQKDLQTWIDQYTNSGAVGNAERSKTPLCESRIQVVEQPGRPGAYSAVAHLRPWLQLEEL
TTSVRMVTKIPG*
MSTELENQVSPEAGTESLSLLDRAIAATNQTPADQTKELFSVLAEQALSGTVTWDKNLTKTIENAIAEIDKQMSRQLSAI
MQQDDFRRLEGSWRGLNKLVTESETGQSLKIKLVDFTKDELIEQFEDAPAVDRSPLFDALYQKEFGTAGGEPYGALIGDY
TFSHKDEDVALMRYMGETAAASHAPFIAAANPEMFEFDSFETFNEGKPVASGFDSPAYASWNAFRESDDSRYVVLTLPQT
LARLPYGDKGLGTKSFAYEELATDADGNPKPKNNAQLVWSNAAYELGLKMTQAHTQFGWCTAIRGLDNGGKVENLPNLTY
KSEAGDLMQQCPIEVNLTDEREKELSDLGFLPLVHYKNTNYGVFIGSQTAQKPKTYTDPDATGNAAISARLPYIMASSRI
AHYLKVMGRDMLGSNLEAADVQKDLQTWIDQYTNSGAVGNAERSKTPLCESRIQVVEQPGRPGAYSAVAHLRPWLQLEEL
TTSVRMVTKIPG*
Nucleotide sequence: 1479 bp
>T6CP005615 NC_016628:c825527-824049 [Vibrio furnissii NCTC 11218] [TssC]
ATGAGTACTGAGTTAGAGAATCAGGTGAGCCCTGAAGCGGGTACCGAGTCACTCAGCCTGTTGGATCGCGCGATTGCCGC
GACCAACCAGACGCCGGCTGATCAAACCAAGGAACTGTTTTCCGTTCTGGCTGAACAAGCGCTGAGCGGCACCGTCACTT
GGGACAAAAACCTGACCAAAACCATCGAAAATGCGATCGCGGAAATCGACAAGCAGATGTCTCGTCAGCTGTCTGCGATC
ATGCAGCAGGATGATTTCCGTCGTCTGGAAGGGTCATGGCGTGGTCTGAACAAGCTCGTCACTGAAAGTGAAACGGGTCA
GTCGCTCAAGATCAAGCTGGTGGACTTCACCAAAGATGAACTGATTGAGCAATTTGAAGACGCACCTGCGGTTGACCGCA
GCCCGCTGTTTGATGCGCTGTATCAGAAAGAATTCGGCACGGCGGGTGGTGAACCTTACGGCGCGCTGATTGGTGACTAC
ACCTTCTCGCACAAAGATGAAGATGTGGCGCTGATGCGTTACATGGGCGAAACCGCAGCGGCAAGCCACGCGCCATTTAT
CGCGGCGGCGAACCCAGAAATGTTTGAGTTTGACTCGTTTGAAACCTTCAATGAGGGGAAACCCGTTGCGTCTGGTTTTG
ACTCGCCAGCCTACGCATCATGGAATGCTTTCCGTGAAAGCGATGATTCACGCTACGTGGTGCTGACACTGCCTCAGACG
CTGGCACGTTTGCCATACGGCGACAAAGGTCTGGGCACCAAATCGTTCGCATACGAAGAATTGGCAACCGACGCGGATGG
CAATCCGAAGCCAAAAAACAATGCGCAACTGGTGTGGTCAAACGCAGCTTACGAGCTGGGTCTGAAAATGACTCAGGCGC
ACACTCAGTTCGGCTGGTGTACCGCGATTCGTGGTCTGGACAACGGTGGTAAAGTCGAGAACCTGCCAAACCTGACTTAC
AAGTCAGAAGCGGGCGATTTGATGCAGCAGTGTCCGATTGAAGTCAACCTGACTGATGAGCGTGAAAAAGAGCTGAGCGA
TCTGGGCTTCCTGCCACTGGTGCACTACAAAAACACCAACTACGGCGTGTTTATTGGCAGCCAAACTGCGCAGAAGCCAA
AAACGTACACCGACCCTGATGCAACGGGTAACGCGGCAATTTCTGCCCGTCTGCCTTACATCATGGCCAGTAGCCGTATC
GCACATTACCTGAAAGTGATGGGCCGTGACATGCTGGGTTCAAACCTGGAAGCGGCGGACGTGCAGAAAGATCTGCAAAC
CTGGATCGATCAGTACACCAACTCGGGTGCGGTGGGCAATGCAGAACGTTCTAAAACGCCGCTGTGTGAATCTCGCATTC
AAGTGGTGGAGCAACCGGGTCGTCCGGGCGCTTATTCAGCAGTGGCGCATCTGCGTCCATGGCTACAACTGGAAGAGCTA
ACCACGTCTGTACGTATGGTTACTAAGATTCCAGGCTAA
ATGAGTACTGAGTTAGAGAATCAGGTGAGCCCTGAAGCGGGTACCGAGTCACTCAGCCTGTTGGATCGCGCGATTGCCGC
GACCAACCAGACGCCGGCTGATCAAACCAAGGAACTGTTTTCCGTTCTGGCTGAACAAGCGCTGAGCGGCACCGTCACTT
GGGACAAAAACCTGACCAAAACCATCGAAAATGCGATCGCGGAAATCGACAAGCAGATGTCTCGTCAGCTGTCTGCGATC
ATGCAGCAGGATGATTTCCGTCGTCTGGAAGGGTCATGGCGTGGTCTGAACAAGCTCGTCACTGAAAGTGAAACGGGTCA
GTCGCTCAAGATCAAGCTGGTGGACTTCACCAAAGATGAACTGATTGAGCAATTTGAAGACGCACCTGCGGTTGACCGCA
GCCCGCTGTTTGATGCGCTGTATCAGAAAGAATTCGGCACGGCGGGTGGTGAACCTTACGGCGCGCTGATTGGTGACTAC
ACCTTCTCGCACAAAGATGAAGATGTGGCGCTGATGCGTTACATGGGCGAAACCGCAGCGGCAAGCCACGCGCCATTTAT
CGCGGCGGCGAACCCAGAAATGTTTGAGTTTGACTCGTTTGAAACCTTCAATGAGGGGAAACCCGTTGCGTCTGGTTTTG
ACTCGCCAGCCTACGCATCATGGAATGCTTTCCGTGAAAGCGATGATTCACGCTACGTGGTGCTGACACTGCCTCAGACG
CTGGCACGTTTGCCATACGGCGACAAAGGTCTGGGCACCAAATCGTTCGCATACGAAGAATTGGCAACCGACGCGGATGG
CAATCCGAAGCCAAAAAACAATGCGCAACTGGTGTGGTCAAACGCAGCTTACGAGCTGGGTCTGAAAATGACTCAGGCGC
ACACTCAGTTCGGCTGGTGTACCGCGATTCGTGGTCTGGACAACGGTGGTAAAGTCGAGAACCTGCCAAACCTGACTTAC
AAGTCAGAAGCGGGCGATTTGATGCAGCAGTGTCCGATTGAAGTCAACCTGACTGATGAGCGTGAAAAAGAGCTGAGCGA
TCTGGGCTTCCTGCCACTGGTGCACTACAAAAACACCAACTACGGCGTGTTTATTGGCAGCCAAACTGCGCAGAAGCCAA
AAACGTACACCGACCCTGATGCAACGGGTAACGCGGCAATTTCTGCCCGTCTGCCTTACATCATGGCCAGTAGCCGTATC
GCACATTACCTGAAAGTGATGGGCCGTGACATGCTGGGTTCAAACCTGGAAGCGGCGGACGTGCAGAAAGATCTGCAAAC
CTGGATCGATCAGTACACCAACTCGGGTGCGGTGGGCAATGCAGAACGTTCTAAAACGCCGCTGTGTGAATCTCGCATTC
AAGTGGTGGAGCAACCGGGTCGTCCGGGCGCTTATTCAGCAGTGGCGCATCTGCGTCCATGGCTACAACTGGAAGAGCTA
ACCACGTCTGTACGTATGGTTACTAAGATTCCAGGCTAA