Detailed information of component protein


Summary

Component ID T6CP005607
Component protein type TssL
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (406 a.a.); Nucleotide sequence (1218 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19140
Coordinate (Strand) 812010..813227 (-)
NCBI ID WP_014257722.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 4.6e-43 56..260
SPOR PF05036.15 7e-10 332..399
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 406 a.a.    

>T6CP005607 NC_016628:c813227-812010 [Vibrio furnissii NCTC 11218] [TssL]
MNQLFDEDTVTIAANEPTPASSQPEKSVRLSNANMLKNHARYSMAQQQGQLFDNSILRVSSDLLSLIISVKRMQCPADLY
TFRAGIKHAITELKYRIAALDYPPSVADKTCFLFAVMIDEQILHSSWGDEAGWENQTLVSELFNIKNGGEQFYIIAERAL
LQPVLLVDLLELIYIMLKMGFRGRYRTKGKDQLTALMKRLEEAVFAKPVAYSAAERLAPVAADDMAARHAKRPKKPVGVW
RSVALFVVMSALVWGGLRYWYEATSPQKALPFTQLTQFTQTYYSKGSVQDQEYVYESTSSDMASEGWHPTPQTIADREPA
PPAVAKQPAGNRQWLVQLASFNNPSDAAKFIARYKPRVPSAQVKTVNGRYRVVSESYTTKSAAIDTLSTAKSAGISDAFL
LIDTN*

  Nucleotide sequence: 1218 bp    

>T6CP005607 NC_016628:c813227-812010 [Vibrio furnissii NCTC 11218] [TssL]
ATGAATCAATTGTTCGATGAAGATACCGTCACGATCGCCGCCAATGAGCCGACGCCTGCGTCCAGTCAGCCGGAAAAATC
CGTTCGTCTGAGCAACGCCAATATGCTCAAAAACCATGCGCGTTACAGCATGGCTCAGCAGCAGGGGCAACTGTTTGACA
ACAGCATTCTGCGCGTCAGTTCGGACTTGCTGTCGCTGATCATTTCGGTCAAACGTATGCAATGTCCGGCCGATCTTTAC
ACGTTCCGCGCGGGCATCAAGCACGCGATCACCGAGCTTAAATATCGCATTGCCGCGTTGGATTATCCGCCTTCGGTGGC
GGACAAAACCTGTTTTCTGTTTGCCGTGATGATCGACGAACAGATCCTGCACTCATCATGGGGCGATGAAGCGGGTTGGG
AAAATCAAACGCTGGTCAGCGAACTGTTCAATATCAAAAACGGCGGTGAGCAGTTTTACATCATTGCCGAGCGTGCGCTG
CTGCAACCGGTGTTGTTGGTCGATCTGCTCGAGTTAATCTACATCATGCTCAAGATGGGCTTTCGTGGTCGCTATCGCAC
CAAAGGTAAGGATCAACTGACCGCGCTGATGAAACGTCTGGAAGAGGCGGTGTTTGCCAAACCGGTGGCGTATTCGGCCG
CTGAACGTCTGGCGCCCGTGGCCGCCGACGATATGGCCGCTCGTCATGCCAAACGGCCGAAAAAACCGGTCGGCGTGTGG
CGTTCGGTGGCGCTGTTTGTGGTGATGTCGGCTTTGGTGTGGGGCGGATTACGCTATTGGTATGAGGCGACCTCGCCGCA
AAAAGCACTGCCTTTCACCCAACTGACGCAGTTTACCCAAACCTATTACAGCAAGGGCAGCGTGCAGGACCAAGAGTACG
TGTATGAAAGTACCTCGTCGGACATGGCATCGGAAGGGTGGCATCCCACGCCGCAAACCATCGCCGATCGAGAACCGGCG
CCCCCCGCAGTGGCAAAACAACCCGCAGGCAACCGTCAGTGGTTGGTGCAACTGGCGAGTTTTAATAATCCGAGTGATGC
GGCCAAGTTCATTGCCCGCTACAAACCTCGCGTACCGAGTGCTCAGGTCAAAACGGTGAACGGGCGTTATCGCGTGGTGA
GCGAAAGCTATACGACCAAATCGGCTGCGATTGATACGCTCTCTACCGCCAAAAGTGCCGGGATTTCCGATGCCTTTTTA
CTCATTGATACCAATTAG