Detailed information of component protein


Summary

Component ID T6CP005613
Component protein type TssF
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (592 a.a.); Nucleotide sequence (1776 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19175
Coordinate (Strand) 820409..822184 (-)
NCBI ID WP_014257728.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.1e-128 1..588
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 592 a.a.    

>T6CP005613 NC_016628:c822184-820409 [Vibrio furnissii NCTC 11218] [TssF]
MSDQLLSYFERELTYIRRALDGFGKDFPEHASSMRLNQSSQEDPNISRLIDAVALLTAKTEKRMDEQFPEILQDLFHVLY
PGYLQIVPSYAPLSLNLEDNAVTEAVVLPQGSEVAVAVNDAECRFTLAQALTIEPYVIAALRAESAPFNFPTPAGLRRAE
AVIQVELACSDPSVLFSQLSLQHFDFYVRGFENSARGLVDMLLLNTEVLSVFDASGQQRVVDATRLKSRVADPDFHWLPQ
YGNHLGGFDLLRDYFAYPDKAAYLRITDLGQELMSFDANRVTLNFFVRQLPAEYLRLFSRDVLALNTAPAINLYAQYGDP
IRYDFTRLSMPVVADTRAKNELTVVSVDEVNEVLPTGEVPLSPNYEGGYWLDDESPRWQIHQFWDERGRRQMDISVSYTE
LQPAQESVVLSLRLHVCNGRLPCLIPANAVMESLAAIDLPGDLKLLKTPTAPQYPPLDNQLSWRFVAMLNANFSGLIQNE
DPTRMLQDVLRLCSNSAQCAVADAIKKVAYNHVVAPLTINGRSIFASGTEVMILIDDELLDSNFAVVSEVLNAYFRQYCS
FDRFVQVSVERFGSDEAGIHFDKTHGSQLCL*

  Nucleotide sequence: 1776 bp    

>T6CP005613 NC_016628:c822184-820409 [Vibrio furnissii NCTC 11218] [TssF]
TTGTCTGATCAATTATTGAGTTATTTTGAGCGCGAGCTCACCTACATTCGTCGTGCGCTGGATGGGTTTGGCAAAGACTT
TCCCGAACACGCTTCGTCAATGCGTTTGAATCAGAGCAGTCAGGAAGACCCGAATATCAGTCGCCTGATTGATGCGGTGG
CGCTGCTGACCGCGAAAACTGAAAAACGCATGGATGAGCAGTTCCCCGAGATCCTGCAGGATCTGTTTCACGTCCTGTAT
CCCGGCTATCTGCAAATTGTGCCGAGTTATGCGCCGCTGTCGCTCAACCTTGAAGACAACGCAGTGACCGAAGCGGTGGT
GTTGCCGCAAGGCTCAGAAGTGGCGGTGGCAGTGAATGACGCCGAGTGCCGCTTTACGCTGGCGCAGGCATTGACGATTG
AACCGTATGTGATTGCGGCGTTGCGCGCCGAGTCGGCGCCGTTTAATTTCCCGACGCCAGCCGGACTGCGCCGCGCAGAA
GCGGTGATTCAGGTTGAACTGGCGTGCAGCGATCCTTCCGTGTTGTTTTCGCAGTTATCGCTACAACATTTTGATTTCTA
TGTGCGCGGGTTTGAAAACAGCGCCCGTGGTCTGGTTGACATGCTGCTGCTCAATACCGAAGTGTTGTCGGTATTTGATG
CGTCGGGTCAGCAGCGTGTCGTCGATGCGACGCGGTTGAAATCGCGCGTGGCCGATCCCGATTTTCACTGGCTGCCGCAA
TATGGCAACCACTTGGGTGGCTTTGACCTGCTGCGCGACTACTTTGCTTACCCGGACAAAGCGGCCTACTTGCGGATTAC
TGACCTTGGCCAGGAACTGATGAGTTTTGACGCCAATCGCGTCACGCTCAACTTCTTTGTGCGTCAACTGCCGGCGGAAT
ATCTGCGCCTGTTCAGTCGTGACGTGTTGGCGCTCAATACCGCGCCCGCGATCAATCTCTACGCTCAGTATGGCGATCCG
ATTCGTTATGATTTCACGCGCCTGTCGATGCCGGTTGTCGCGGACACGCGTGCTAAAAACGAACTGACGGTGGTCAGTGT
GGACGAAGTCAACGAAGTGCTGCCGACGGGCGAAGTGCCGCTGAGTCCGAACTACGAAGGCGGATACTGGCTCGATGATG
AGTCACCGCGCTGGCAGATTCATCAGTTCTGGGACGAGCGTGGCCGTCGTCAGATGGACATTTCTGTCAGTTATACCGAG
CTGCAACCGGCTCAGGAGTCGGTGGTGCTGTCGCTGCGTCTGCACGTGTGTAACGGCCGTTTACCGTGCCTCATTCCGGC
GAATGCGGTGATGGAATCGCTGGCTGCGATTGATCTACCGGGCGATCTGAAACTACTGAAAACACCGACCGCGCCGCAGT
ATCCGCCACTGGACAATCAGCTGAGCTGGCGTTTTGTGGCCATGCTCAACGCGAACTTTTCCGGGCTGATTCAGAACGAA
GACCCGACCCGAATGCTGCAGGACGTGCTGCGTTTGTGCAGTAACAGTGCGCAGTGCGCCGTCGCGGATGCGATTAAAAA
AGTGGCCTACAACCACGTGGTCGCGCCACTGACGATCAATGGCCGCAGCATTTTTGCGTCCGGCACTGAGGTGATGATTC
TGATCGATGATGAACTGCTCGACAGCAACTTTGCCGTCGTCAGCGAAGTGCTGAATGCCTATTTCCGCCAATATTGCAGT
TTTGACCGTTTCGTTCAGGTCAGTGTGGAGCGGTTTGGTAGCGATGAGGCCGGGATTCATTTTGATAAAACGCACGGGAG
CCAGCTATGTCTCTGA