Detailed information of component protein


Summary

Component ID T6CP011964
Component protein type FHA
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (330 a.a.); Nucleotide sequence (990 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19155
Coordinate (Strand) 815080..816069 (-)
NCBI ID WP_014257724.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 2.6e-17 29..96
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 330 a.a.    

>T6CP011964 NC_016628:c816069-815080 [Vibrio furnissii NCTC 11218] [FHA]
MTISFQIIDLPEDEQIGSRQVSLPVSGGTLGRSFECTIQLPDFQRTLSRVHADIQPHPKGGYQIIDRSTNGVFVNDVLVG
KGESQRLSDGDRIVIGAYTLLVSDMDALLTRAPQQSDDTETASLKGAADSPFAASMVLDDSQDTAFGFAHLDEIQDAVQG
ETPFSTENVLGDDLYGYDPFEDDERWVLEQSQSEDTTEQIVLMPEATQFNDNNHAPQHSVTVSDHRQIESLENSIEQLSS
MLKQQQLSVAGGIDRERLMTCIESTLEKFLDNFNPSHLEEEFNDYLSGWGNKDKKYWALYKKQFQRKTERREFSRQFSSL
LFEALREKR*

  Nucleotide sequence: 990 bp    

>T6CP011964 NC_016628:c816069-815080 [Vibrio furnissii NCTC 11218] [FHA]
ATGACGATCAGTTTTCAGATAATCGACCTTCCTGAAGATGAACAAATCGGTAGCCGTCAGGTATCACTGCCGGTCAGTGG
CGGCACGTTAGGACGCTCGTTTGAGTGCACCATTCAGTTGCCGGATTTTCAGCGCACACTGTCACGTGTCCACGCTGACA
TTCAACCGCATCCGAAAGGCGGCTACCAAATTATCGATCGCAGTACCAACGGCGTATTTGTCAATGATGTGCTGGTGGGC
AAAGGCGAATCGCAGCGCCTCAGCGATGGCGACCGGATTGTGATTGGGGCTTACACCTTATTGGTCAGCGATATGGATGC
GTTGTTGACGCGCGCGCCACAACAGAGCGACGACACCGAAACGGCCAGCCTGAAGGGCGCCGCCGATTCACCGTTTGCGG
CCAGCATGGTCTTAGATGACAGTCAGGACACCGCATTTGGTTTTGCGCATCTGGACGAGATTCAAGATGCGGTGCAAGGC
GAGACGCCGTTTTCGACGGAGAACGTGCTGGGCGATGACCTGTATGGTTACGACCCGTTTGAAGACGATGAGCGTTGGGT
GCTGGAGCAGAGCCAGAGTGAAGATACCACCGAACAGATTGTGTTGATGCCCGAAGCGACTCAGTTCAATGACAACAATC
ATGCCCCGCAGCACAGTGTGACGGTCAGCGATCATCGTCAGATAGAGTCACTGGAAAACAGCATTGAACAGCTGAGTTCG
ATGCTCAAACAGCAACAGCTGAGCGTGGCGGGTGGCATTGACCGTGAACGTCTGATGACCTGCATTGAGTCGACACTGGA
AAAATTCCTCGACAATTTCAACCCGAGTCATCTGGAAGAGGAGTTCAACGACTATCTTTCTGGCTGGGGGAACAAAGATA
AAAAATATTGGGCGCTGTATAAGAAACAGTTCCAGCGCAAAACCGAGCGTCGGGAGTTTTCCCGTCAGTTCTCCTCCCTG
TTATTTGAAGCCCTGAGAGAGAAACGATGA