Detailed information of component protein


Summary

Component ID T6CP008957
Component protein type TssE
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (141 a.a.); Nucleotide sequence (423 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19180
Coordinate (Strand) 822177..822599 (-)
NCBI ID WP_004727572.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 8.5e-12 17..114
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 141 a.a.    

>T6CP008957 NC_016628:c822599-822177 [Vibrio furnissii NCTC 11218] [TssE]
MSFWRTFLDKSGSSNHELLDSVRYQLTALLNSEAPMMALPKGFSAVEASNFCFGLDCAHSISSQINKDQFARSMEKWVRT
FEPRLSEVSVFVEESQPGKNVMRFSLMAKVKTANGEHVFLFDSNISLSSQTARMEGQEVV*

  Nucleotide sequence: 423 bp    

>T6CP008957 NC_016628:c822599-822177 [Vibrio furnissii NCTC 11218] [TssE]
ATGAGTTTCTGGCGCACATTCCTCGATAAAAGTGGCAGCAGCAATCATGAGCTGCTTGATTCGGTACGCTACCAGCTGAC
GGCGCTGCTCAATTCTGAAGCGCCGATGATGGCACTGCCAAAAGGCTTTTCGGCCGTCGAAGCCTCCAACTTTTGCTTCG
GTCTGGACTGCGCACACAGCATCAGCAGCCAGATCAACAAAGATCAGTTTGCCCGTTCGATGGAAAAGTGGGTCAGAACC
TTTGAGCCGCGCCTGTCAGAAGTGAGCGTCTTTGTCGAAGAGAGCCAGCCGGGCAAAAACGTGATGCGTTTTTCGCTGAT
GGCCAAGGTGAAAACCGCCAACGGCGAGCACGTGTTCCTGTTTGATTCCAATATCAGTCTGTCCAGCCAGACCGCCCGTA
TGGAGGGACAAGAAGTTGTCTGA