Detailed information of component protein
Summary
| Component ID | T6CP005614 |
| Component protein type | TssC |
| T6SS ID (Type) | T6SS00529  (Type i5) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (475 a.a.); Nucleotide sequence (1425 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS19185 |
| Coordinate (Strand) | 822596..824020 (-) |
| NCBI ID | WP_014257729.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VipB | PF05943.14 | 2.6e-75 | 48..346 |
| VipB_2 | PF18945.2 | 7.8e-33 | 354..461 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 475 a.a.
>T6CP005614 NC_016628:c824020-822596 [Vibrio furnissii NCTC 11218] [TssC]
MFDADFQHAFCQLNPEAEDFLPQALAQLLKLDPQMLSNREVLLASLLRLIAEIDDRMSRQLSTIIHHPDFSRLEASWKGV
EALVSLPVNYQKVQIKIRNMSWEDLSQELNTAVSLRRTSLYNLIGNRELNTSGGQPFGLVVVDHALSMSLDGDYDDLYTL
ELLSQLGDLCLCPFILSPSDDFFGESGADWFSDIERVKKILHGPEFVAWQRVRRLSSARFIGLVVPKIRLREAYGRSASS
AIQFREYSANPAGLWGSAAYLFASVAIREFNRINWFGFMKSRWQDKYYGSLGNVPPGGAGVSATLRPTPDIRLITEMGTF
YADEGFIPLCHSLTTDKYFFRGNNSIWSEAKDDTESVMGQIQTTLMICRIAHYLKVQIRSMIGNFQTAEECETYLNRWLD
KYSSNLFNADEATLAKYPLSKGRVEVREIAGQHGRYTCDVFVQPQYQFDNVCGEVLLSTDLGPESEPRFAGGLV*
MFDADFQHAFCQLNPEAEDFLPQALAQLLKLDPQMLSNREVLLASLLRLIAEIDDRMSRQLSTIIHHPDFSRLEASWKGV
EALVSLPVNYQKVQIKIRNMSWEDLSQELNTAVSLRRTSLYNLIGNRELNTSGGQPFGLVVVDHALSMSLDGDYDDLYTL
ELLSQLGDLCLCPFILSPSDDFFGESGADWFSDIERVKKILHGPEFVAWQRVRRLSSARFIGLVVPKIRLREAYGRSASS
AIQFREYSANPAGLWGSAAYLFASVAIREFNRINWFGFMKSRWQDKYYGSLGNVPPGGAGVSATLRPTPDIRLITEMGTF
YADEGFIPLCHSLTTDKYFFRGNNSIWSEAKDDTESVMGQIQTTLMICRIAHYLKVQIRSMIGNFQTAEECETYLNRWLD
KYSSNLFNADEATLAKYPLSKGRVEVREIAGQHGRYTCDVFVQPQYQFDNVCGEVLLSTDLGPESEPRFAGGLV*
Nucleotide sequence: 1425 bp
>T6CP005614 NC_016628:c824020-822596 [Vibrio furnissii NCTC 11218] [TssC]
ATGTTTGATGCTGATTTTCAACACGCGTTTTGCCAGCTCAACCCTGAGGCGGAAGATTTTCTGCCTCAGGCGTTGGCGCA
ACTGTTGAAACTCGACCCACAGATGTTGAGTAATCGTGAGGTGCTGTTGGCATCACTGCTGCGTTTGATTGCAGAGATTG
ACGACCGCATGTCGCGTCAGCTATCAACCATCATTCATCATCCTGATTTTTCTCGTCTCGAAGCATCCTGGAAAGGGGTC
GAGGCCTTAGTGTCTCTGCCGGTGAATTACCAGAAAGTGCAGATTAAAATCAGAAATATGTCCTGGGAGGATCTCTCCCA
GGAACTTAACACCGCTGTCTCATTGCGACGCACGTCCCTCTATAACCTGATTGGTAACCGCGAGCTCAATACCTCCGGTG
GTCAGCCGTTTGGTCTGGTGGTGGTGGATCATGCGTTGTCGATGAGTCTTGATGGTGACTACGATGACCTCTACACATTA
GAGCTGTTGTCTCAACTGGGTGATCTTTGTCTTTGTCCGTTTATTCTCTCTCCGTCGGATGACTTTTTTGGCGAATCAGG
TGCCGACTGGTTTTCAGACATTGAACGGGTAAAGAAAATATTACACGGTCCGGAATTTGTGGCCTGGCAACGGGTGAGAC
GTTTGTCTTCCGCCCGTTTTATTGGTTTGGTGGTGCCGAAGATTCGCCTGCGCGAAGCGTATGGCCGCAGCGCCAGCAGC
GCCATTCAATTTCGGGAATACAGCGCGAATCCGGCCGGTTTGTGGGGCAGCGCGGCGTATCTGTTTGCCTCGGTTGCGAT
TCGTGAATTCAATCGCATCAACTGGTTTGGCTTTATGAAGTCACGCTGGCAGGACAAATATTACGGCTCGCTCGGCAATG
TGCCACCGGGCGGCGCAGGCGTCAGTGCCACACTCAGACCCACACCCGATATCCGTTTGATCACCGAGATGGGCACGTTT
TACGCCGACGAAGGCTTCATTCCGCTCTGTCACAGCCTGACCACGGACAAATATTTCTTTCGCGGCAACAACTCCATCTG
GAGTGAAGCGAAAGACGATACCGAATCGGTGATGGGCCAGATCCAAACCACGCTCATGATCTGTCGCATTGCGCATTATC
TCAAAGTGCAGATCCGCAGCATGATCGGGAATTTCCAAACCGCAGAAGAGTGTGAAACCTACCTCAACCGTTGGTTGGAT
AAGTATTCCAGCAACCTGTTTAACGCCGATGAAGCCACGCTGGCCAAGTATCCGCTCAGTAAAGGCCGGGTTGAGGTGCG
TGAAATCGCTGGTCAACATGGCCGCTATACCTGTGACGTATTTGTTCAGCCTCAGTACCAGTTCGACAACGTGTGCGGCG
AAGTGCTGCTGTCGACGGATCTCGGGCCGGAAAGCGAGCCAAGATTTGCCGGAGGTCTGGTATGA
ATGTTTGATGCTGATTTTCAACACGCGTTTTGCCAGCTCAACCCTGAGGCGGAAGATTTTCTGCCTCAGGCGTTGGCGCA
ACTGTTGAAACTCGACCCACAGATGTTGAGTAATCGTGAGGTGCTGTTGGCATCACTGCTGCGTTTGATTGCAGAGATTG
ACGACCGCATGTCGCGTCAGCTATCAACCATCATTCATCATCCTGATTTTTCTCGTCTCGAAGCATCCTGGAAAGGGGTC
GAGGCCTTAGTGTCTCTGCCGGTGAATTACCAGAAAGTGCAGATTAAAATCAGAAATATGTCCTGGGAGGATCTCTCCCA
GGAACTTAACACCGCTGTCTCATTGCGACGCACGTCCCTCTATAACCTGATTGGTAACCGCGAGCTCAATACCTCCGGTG
GTCAGCCGTTTGGTCTGGTGGTGGTGGATCATGCGTTGTCGATGAGTCTTGATGGTGACTACGATGACCTCTACACATTA
GAGCTGTTGTCTCAACTGGGTGATCTTTGTCTTTGTCCGTTTATTCTCTCTCCGTCGGATGACTTTTTTGGCGAATCAGG
TGCCGACTGGTTTTCAGACATTGAACGGGTAAAGAAAATATTACACGGTCCGGAATTTGTGGCCTGGCAACGGGTGAGAC
GTTTGTCTTCCGCCCGTTTTATTGGTTTGGTGGTGCCGAAGATTCGCCTGCGCGAAGCGTATGGCCGCAGCGCCAGCAGC
GCCATTCAATTTCGGGAATACAGCGCGAATCCGGCCGGTTTGTGGGGCAGCGCGGCGTATCTGTTTGCCTCGGTTGCGAT
TCGTGAATTCAATCGCATCAACTGGTTTGGCTTTATGAAGTCACGCTGGCAGGACAAATATTACGGCTCGCTCGGCAATG
TGCCACCGGGCGGCGCAGGCGTCAGTGCCACACTCAGACCCACACCCGATATCCGTTTGATCACCGAGATGGGCACGTTT
TACGCCGACGAAGGCTTCATTCCGCTCTGTCACAGCCTGACCACGGACAAATATTTCTTTCGCGGCAACAACTCCATCTG
GAGTGAAGCGAAAGACGATACCGAATCGGTGATGGGCCAGATCCAAACCACGCTCATGATCTGTCGCATTGCGCATTATC
TCAAAGTGCAGATCCGCAGCATGATCGGGAATTTCCAAACCGCAGAAGAGTGTGAAACCTACCTCAACCGTTGGTTGGAT
AAGTATTCCAGCAACCTGTTTAACGCCGATGAAGCCACGCTGGCCAAGTATCCGCTCAGTAAAGGCCGGGTTGAGGTGCG
TGAAATCGCTGGTCAACATGGCCGCTATACCTGTGACGTATTTGTTCAGCCTCAGTACCAGTTCGACAACGTGTGCGGCG
AAGTGCTGCTGTCGACGGATCTCGGGCCGGAAAGCGAGCCAAGATTTGCCGGAGGTCTGGTATGA