Detailed information of component protein


Summary

Component ID T6CP005606
Component protein type TssM
T6SS ID (Type) T6SS00529 insolico (Type i5)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (1137 a.a.); Nucleotide sequence (3411 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS19135
Coordinate (Strand) 808587..811997 (-)
NCBI ID WP_014257721.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 6.9e-52 165..416
IcmF-related PF06761.14 2.9e-35 472..765
IcmF_C PF06744.14 1.8e-15 1012..1117
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1137 a.a.    

>T6CP005606 NC_016628:c811997-808587 [Vibrio furnissii NCTC 11218] [TssM]
MMDKKKAILFSTLAACLVGLVTSVVLWLTGTYWLTPWWAVALQVMVMVLILALVGWGVYAYLRRPKVDETLKQHDEWRKR
VLKNRFALIWKKHSKVTSNPYHVPWYVHVSADVSSDVRWLQQMGFESVESIEPVPDDLIAVRFWVSDSAVLISVDMSFPL
ATRQASLDVVCELVMKKRDRQAFNGVLCTVDLDHLLQKNEMAVSEFSQQYRTLLSDLNQRTGLSLPTYCVLTNMAAVRDF
CELFSTLDEAAREQPFGVLRPVDEGKGYDKAWFDESFDDLMRRLAVTASESLKQQLHADYRAASVAGIFQLLALRYDIED
FLSLTFSQHAFDEVALHFRGFFFVNVGGEGASTDILTYMHASDLGFESLAGTQQHASSPSLFGKNLFRSCIVKEAPLVGV
YRQREWRYRASRVAVFGGLLLLFGGFLWMLKASFDYQQALDNQALIKLNQYKENLKQDTMVADDLSSPVFSLSELRDINN
LYDKQHRPWYVSDWLPDSSIRRFVHQTYYEELSSVLLTLMRDYILKDLFVYNSLDDKVKMLELLNYHQILYSKHRDDVDS
LVNYYLTSLKEEGEGDVALLERFTALAEDLLRSGATPPDAEPELLALVRKSLSANDISELLYQHILQHPDFSRRVDMRTK
LNPSYQHVFVFKPGFTGYLIPYLFTREGFEDLYNETGFQLASEAIKSYEGVMGNISGDAEMNRINRQLRERYIGDYVRYW
QALMANVSWVDVSGWGEVSKQIEMTVDPVYSPLSQFYHLVAVHTNLSQKKEGESAPKESREAKEQQVEAGEPNVTAISNT
SERVRASIAAPFKAMHQLVAVNEAGQSRLSIALSQLQQTSDWIAKSKETQDRGSYFLAQLQNTDSNNPLSQLNALAADYN
DPVLPMLMRGVARTTNRLAQSAMKAVINHDWSVLYGGYVRHFAGRYPFDKQAEFDASLADFADFFQSGGQFDQFAQKYAA
YLDLTHGRQTQLKGFIVNQTLPLSDAYQPFSDAVKRMQSGLFIDGRVGVEFLLRAEKMSPDLTGFTLESGSKLFEYRNGP
LLWQALSWPIPANQTQDIAIITKDDKGAETREKLSGEWSWFRVADKMQSAAVVGSDDVAWRYQSANNEVSLQIKSKSAAQ
PFAPRFFDGLTIPIEL*

  Nucleotide sequence: 3411 bp    

>T6CP005606 NC_016628:c811997-808587 [Vibrio furnissii NCTC 11218] [TssM]
ATGATGGATAAGAAAAAAGCCATTCTCTTTTCAACGCTGGCGGCATGCCTGGTTGGCCTTGTGACGAGTGTGGTGTTGTG
GCTGACCGGAACTTACTGGTTGACGCCGTGGTGGGCGGTGGCGCTGCAAGTAATGGTGATGGTGCTGATTCTGGCGCTGG
TGGGGTGGGGCGTGTACGCCTATTTGCGTCGTCCGAAAGTGGATGAAACCCTCAAGCAGCACGACGAGTGGCGCAAGCGC
GTGCTCAAAAACCGCTTTGCGTTGATTTGGAAAAAGCACAGCAAGGTGACTTCTAACCCGTATCATGTGCCTTGGTATGT
GCATGTGTCGGCGGATGTGAGTTCTGACGTTCGCTGGTTGCAGCAAATGGGGTTTGAAAGTGTCGAATCCATCGAACCCG
TACCAGATGATTTGATTGCGGTGCGCTTTTGGGTGTCCGACAGTGCGGTGCTGATCTCCGTTGATATGAGTTTTCCGCTC
GCCACACGCCAAGCCAGTTTGGATGTGGTGTGTGAACTGGTGATGAAAAAACGCGACCGTCAGGCGTTTAACGGCGTGCT
GTGCACGGTGGACCTCGACCACCTGTTGCAGAAAAACGAAATGGCGGTCAGTGAGTTCAGCCAACAGTATCGAACGCTGC
TGAGTGATTTAAACCAACGCACCGGATTGTCGCTACCCACCTACTGCGTGTTGACCAATATGGCCGCAGTGCGTGATTTT
TGTGAGTTGTTCTCGACCTTGGATGAAGCCGCACGCGAGCAACCTTTTGGCGTGTTGCGTCCGGTTGACGAAGGCAAAGG
GTATGACAAAGCGTGGTTTGATGAATCGTTTGACGACCTGATGCGACGCTTGGCGGTCACCGCCAGCGAATCGCTCAAGC
AGCAATTACATGCCGATTATCGCGCCGCATCGGTGGCGGGCATTTTCCAACTGTTGGCGCTGCGCTACGACATTGAAGAT
TTCTTGTCACTCACCTTCAGCCAGCATGCGTTTGATGAAGTTGCGTTGCATTTTCGTGGTTTCTTCTTCGTTAACGTTGG
CGGAGAAGGGGCATCCACTGACATTTTGACCTACATGCATGCCTCCGATCTTGGCTTTGAATCGCTGGCCGGAACGCAGC
AACATGCCTCCAGCCCGAGCCTATTTGGCAAGAATCTGTTTCGCAGTTGTATTGTCAAAGAAGCGCCTTTGGTGGGGGTA
TACCGCCAACGTGAATGGCGTTACCGCGCTTCGCGAGTTGCGGTTTTCGGTGGCTTATTGCTGCTGTTTGGTGGCTTTTT
GTGGATGTTAAAGGCGAGTTTCGACTATCAGCAGGCCTTGGACAATCAAGCGCTGATCAAACTCAACCAATACAAAGAGA
ACCTGAAGCAAGACACAATGGTTGCCGATGATCTCTCATCGCCGGTATTCAGCTTGTCGGAGCTGCGAGACATCAACAAT
CTGTACGACAAACAGCATCGTCCTTGGTATGTCAGTGACTGGCTGCCAGATTCCAGTATCAGACGTTTTGTGCATCAGAC
CTATTATGAAGAACTGAGCAGCGTACTGCTGACGCTGATGCGCGACTACATCCTCAAAGATCTGTTTGTCTACAACTCAC
TGGATGACAAAGTGAAAATGCTGGAGCTGCTGAACTATCATCAGATCCTCTACAGCAAGCATCGCGATGATGTCGATTCA
CTGGTCAATTACTACCTGACCTCGCTCAAAGAGGAAGGGGAAGGCGATGTCGCACTGCTTGAACGCTTCACGGCATTGGC
TGAAGATTTGCTGCGCAGCGGGGCCACGCCGCCAGACGCCGAACCGGAGCTACTGGCGCTGGTGCGCAAATCGTTGTCGG
CCAACGACATCAGTGAATTGCTTTATCAGCACATTTTGCAACACCCGGATTTTTCACGCCGTGTCGATATGCGCACCAAG
CTGAATCCGTCTTATCAGCACGTGTTCGTGTTCAAACCGGGTTTTACCGGCTATTTGATTCCGTACCTGTTTACCCGCGA
AGGCTTTGAGGATTTGTACAACGAAACCGGCTTTCAGCTGGCGTCAGAGGCGATCAAATCTTACGAGGGCGTGATGGGCA
ATATCAGCGGTGACGCTGAAATGAACCGCATCAACCGTCAGTTGCGTGAACGCTATATCGGTGATTATGTCCGATATTGG
CAAGCGTTAATGGCCAACGTCAGTTGGGTGGACGTGTCGGGATGGGGCGAGGTCAGCAAGCAGATTGAGATGACGGTCGA
TCCGGTCTACTCGCCACTCAGCCAGTTCTACCATCTGGTCGCGGTGCATACCAATCTGAGCCAGAAGAAAGAAGGTGAAT
CTGCGCCCAAAGAGAGCCGTGAAGCCAAAGAGCAACAGGTGGAGGCGGGCGAGCCGAATGTGACTGCGATCAGCAATACC
AGCGAACGGGTGCGAGCCTCAATTGCTGCGCCGTTCAAGGCGATGCATCAACTGGTGGCGGTGAACGAAGCGGGACAAAG
CCGACTGAGCATTGCGCTTTCGCAACTGCAACAGACCAGTGATTGGATTGCGAAATCCAAAGAAACACAGGATCGCGGCA
GCTACTTCTTGGCGCAGTTGCAAAACACCGATTCGAATAACCCGTTGTCACAGCTCAATGCCTTGGCGGCGGATTACAAT
GATCCCGTTCTGCCGATGTTGATGCGCGGCGTGGCACGAACGACCAACCGATTGGCACAAAGTGCGATGAAAGCGGTGAT
CAACCACGACTGGAGTGTGTTGTACGGCGGTTATGTGCGTCACTTTGCCGGCCGTTATCCGTTCGATAAGCAGGCGGAGT
TTGATGCCTCGTTGGCCGATTTTGCTGATTTCTTTCAATCCGGAGGTCAGTTTGATCAGTTCGCGCAGAAATACGCTGCC
TACTTGGACCTGACACATGGGCGTCAAACGCAGCTCAAAGGCTTTATCGTCAATCAGACATTGCCACTGTCCGATGCATA
TCAACCATTCAGTGATGCGGTCAAACGCATGCAAAGTGGCCTGTTTATTGATGGCCGTGTCGGCGTCGAGTTTTTACTGC
GGGCGGAAAAGATGTCGCCGGACTTGACTGGATTTACGCTCGAATCAGGCAGCAAACTGTTTGAATACCGCAATGGACCG
TTATTGTGGCAAGCGCTCAGTTGGCCGATTCCGGCGAACCAAACGCAGGACATCGCCATCATCACCAAAGATGACAAAGG
GGCAGAAACTCGCGAGAAGCTGAGCGGTGAATGGAGCTGGTTCCGCGTTGCGGACAAGATGCAGAGCGCCGCCGTGGTGG
GCAGTGATGATGTGGCTTGGCGCTATCAGTCAGCCAACAACGAAGTCAGCCTGCAAATTAAGTCGAAAAGTGCGGCCCAG
CCGTTTGCCCCGCGTTTCTTTGACGGCCTGACCATTCCAATCGAACTATGA