Detailed information of component protein
Summary
| Component ID | T6CP005625 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (258 a.a.); Nucleotide sequence (774 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21050 |
| Coordinate (Strand) | 1241403..1242176 (+) |
| NCBI ID | WP_014257996.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 3.6e-61 | 39..240 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 258 a.a.
>T6CP005625 NC_016628:1241403-1242176 [Vibrio furnissii NCTC 11218] [TssL]
MALSKKETQYSSLLFDDVQQINHDQDFWFQLRGDNPNVLIDAATPLFGLSLRVRSLAACDNIEQIYNQTIEEIKAIEIEL
AEQGFEHAILMAYRYILCAFLDEAVMGTEWGASSVWAEHSMLSRFHNETWGGEKVFTILSRLEGEPKRYQALLEFIYQCL
VLGFEGKYRVMDGGQLEREKVIARLHDVLASLEEEEPQDLTRATDHVVRAKYKLSRQLPIWSIFAGFALLWVGLFLGYTY
LLHSKSSDVLNQLNQIL*
MALSKKETQYSSLLFDDVQQINHDQDFWFQLRGDNPNVLIDAATPLFGLSLRVRSLAACDNIEQIYNQTIEEIKAIEIEL
AEQGFEHAILMAYRYILCAFLDEAVMGTEWGASSVWAEHSMLSRFHNETWGGEKVFTILSRLEGEPKRYQALLEFIYQCL
VLGFEGKYRVMDGGQLEREKVIARLHDVLASLEEEEPQDLTRATDHVVRAKYKLSRQLPIWSIFAGFALLWVGLFLGYTY
LLHSKSSDVLNQLNQIL*
Nucleotide sequence: 774 bp
>T6CP005625 NC_016628:1241403-1242176 [Vibrio furnissii NCTC 11218] [TssL]
ATGGCGTTAAGTAAAAAAGAGACCCAATACAGCAGCTTGCTCTTCGATGACGTGCAGCAGATCAACCATGATCAGGACTT
CTGGTTCCAGCTGCGTGGCGATAATCCCAATGTGTTGATCGATGCAGCGACGCCGCTGTTTGGCTTGTCACTGCGCGTCC
GTTCTTTGGCAGCCTGCGACAACATTGAGCAAATCTACAACCAGACCATTGAAGAGATCAAAGCTATCGAGATTGAGCTG
GCTGAACAAGGCTTTGAGCACGCGATTTTGATGGCGTATCGCTACATCCTATGTGCGTTTCTGGATGAAGCGGTGATGGG
CACCGAATGGGGTGCATCCAGCGTATGGGCGGAGCATTCCATGTTGTCGCGTTTTCACAATGAAACGTGGGGCGGTGAAA
AAGTATTCACGATTCTGAGCCGTTTGGAAGGCGAACCGAAGCGTTATCAGGCACTGCTGGAATTCATTTATCAATGTTTG
GTGTTGGGCTTTGAAGGCAAATACCGGGTGATGGATGGTGGCCAACTGGAACGTGAAAAGGTCATTGCCCGTTTGCATGA
TGTGCTCGCGAGTCTTGAAGAGGAAGAACCGCAGGATCTCACGCGAGCCACCGACCATGTTGTGCGCGCCAAATACAAAC
TGAGCCGTCAGTTGCCGATTTGGTCGATTTTTGCCGGTTTTGCCCTGCTGTGGGTCGGACTCTTTCTCGGCTATACCTAT
TTGCTGCACAGCAAATCAAGCGACGTGTTAAATCAACTCAATCAAATACTTTAA
ATGGCGTTAAGTAAAAAAGAGACCCAATACAGCAGCTTGCTCTTCGATGACGTGCAGCAGATCAACCATGATCAGGACTT
CTGGTTCCAGCTGCGTGGCGATAATCCCAATGTGTTGATCGATGCAGCGACGCCGCTGTTTGGCTTGTCACTGCGCGTCC
GTTCTTTGGCAGCCTGCGACAACATTGAGCAAATCTACAACCAGACCATTGAAGAGATCAAAGCTATCGAGATTGAGCTG
GCTGAACAAGGCTTTGAGCACGCGATTTTGATGGCGTATCGCTACATCCTATGTGCGTTTCTGGATGAAGCGGTGATGGG
CACCGAATGGGGTGCATCCAGCGTATGGGCGGAGCATTCCATGTTGTCGCGTTTTCACAATGAAACGTGGGGCGGTGAAA
AAGTATTCACGATTCTGAGCCGTTTGGAAGGCGAACCGAAGCGTTATCAGGCACTGCTGGAATTCATTTATCAATGTTTG
GTGTTGGGCTTTGAAGGCAAATACCGGGTGATGGATGGTGGCCAACTGGAACGTGAAAAGGTCATTGCCCGTTTGCATGA
TGTGCTCGCGAGTCTTGAAGAGGAAGAACCGCAGGATCTCACGCGAGCCACCGACCATGTTGTGCGCGCCAAATACAAAC
TGAGCCGTCAGTTGCCGATTTGGTCGATTTTTGCCGGTTTTGCCCTGCTGTGGGTCGGACTCTTTCTCGGCTATACCTAT
TTGCTGCACAGCAAATCAAGCGACGTGTTAAATCAACTCAATCAAATACTTTAA