Detailed information of component protein


Summary

Component ID T6CP005626
Component protein type TssH
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (871 a.a.); Nucleotide sequence (2613 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21055
Coordinate (Strand) 1242203..1244815 (+)
NCBI ID WP_014257997.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.6e-37 608..769
AAA_lid_9 PF17871.3 1.3e-28 362..453
ClpB_D2-small PF10431.11 1.2e-09 775..849
AAA PF00004.31 5e-09 222..352
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 871 a.a.    

>T6CP005626 NC_016628:1242203-1244815 [Vibrio furnissii NCTC 11218] [TssH]
VIRIELPTLISKLNAQSKLALEQAASLCIERQHPEVTFEHYLDVLTDNPLSDVRLILKQANLELDTVKQALAASYAREQV
LDTYPAFSPLLVELLQEAWLLSTTELDQSELRSGAIFLAAITRADRYLPFKLISLFESINRENLKKHFDVIVADSAETEV
SKPTATQGAANRLEGNNSPLTKYCTNVTEQARNQELDPVLCRENELNLMIDILCRRRKNNPIVVGDAGVGKSAMIEGLAL
RVVAGTVPTQLQNVELLSLDLGLLQAGASVKGEFEKRLKGVIDAIKSSPKPVILFIDEAHTLIGSGNQEGGSDAANLLKP
ALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLEEPTIPQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYI
SGRQLPDKAIDVLDTACARIAINMTTPPKRLALLETACHQRQLEIDMLERAQYLGRDVDHARLDELRTQELADEAEKAAL
TASWQQQKELIESIISLRAELMAMSTADDVEEDARAALQAELNTQYQTLAAIAHHERLMHPQVDAEQIAEVIADWTGVPV
DQMNTDELHKITHLTDILGAAIKGQDTAIERVHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQF
LTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQAFDKGELADGEGRLID
CQNIVFFLTSNLGYQTIVDFADDPKALDEALYPELAAFFKPALLARMEVIPYMPLNKAILELIVKGKLARLEKLFRDRYN
AEVVIEDRLIEEILNRATRSENGARMLEAIIEGQLLPPVSLALLNKLAEKQPVHRIHLDALDGEFKGEVA*

  Nucleotide sequence: 2613 bp    

>T6CP005626 NC_016628:1242203-1244815 [Vibrio furnissii NCTC 11218] [TssH]
GTGATTCGTATTGAACTACCCACTCTGATTTCAAAATTAAACGCCCAAAGCAAGCTGGCTCTTGAACAGGCGGCCTCGCT
GTGTATCGAACGTCAGCATCCGGAAGTGACGTTTGAACATTATTTGGATGTATTGACGGACAACCCGTTGTCGGATGTGC
GCTTGATTCTGAAACAAGCCAATCTGGAACTGGATACCGTAAAACAAGCTTTGGCCGCCAGCTATGCGCGCGAACAAGTG
CTCGATACGTATCCAGCATTTTCCCCCTTGCTGGTCGAGCTGTTGCAAGAAGCATGGCTGCTTTCCACCACCGAACTGGA
CCAAAGCGAATTGCGCTCGGGGGCAATTTTTCTTGCGGCAATCACACGCGCTGACCGTTATCTGCCTTTCAAACTGATCA
GTCTGTTTGAAAGCATTAACCGTGAAAATCTGAAAAAACATTTTGATGTGATTGTGGCTGATTCGGCAGAAACTGAAGTC
AGTAAACCCACAGCAACGCAGGGCGCCGCCAATCGTCTGGAAGGGAACAATTCTCCGCTCACCAAGTACTGCACCAACGT
GACCGAACAGGCGCGCAATCAAGAACTGGATCCGGTGCTGTGTCGTGAGAACGAACTCAACCTGATGATCGATATTTTGT
GCCGCCGCCGCAAAAACAACCCGATTGTGGTCGGGGATGCGGGTGTCGGTAAAAGTGCCATGATTGAAGGTTTGGCGCTG
CGTGTGGTCGCAGGCACCGTGCCGACACAGCTCCAAAACGTTGAGCTGCTCTCACTGGATCTCGGTTTGCTGCAAGCGGG
TGCTTCGGTGAAAGGGGAGTTTGAGAAACGCTTGAAAGGCGTGATCGATGCGATTAAGAGCTCGCCAAAGCCGGTCATTC
TGTTTATCGATGAAGCGCACACCTTGATTGGCTCCGGAAATCAGGAAGGCGGCAGTGACGCGGCAAACTTGCTGAAACCC
GCTCTGGCGCGTGGCGAGCTGAGCACCGTCGCGGCGACGACGTGGAAAGAGTACAAAAAATACTTTGAAAAAGATCCGGC
ACTGACGCGCCGTTTCCAACTGGTGAAGTTAGAAGAACCGACGATTCCCCAAGCGGTCGACATTTTGCGCGGCCTCAACA
GTGTGTATGAAAAAGCGCACAACGTGCTGATCACCGATGATGCGTTAAAAGCAGCGGCAGAATTATCCGCGCGCTACATC
TCAGGTCGTCAGCTGCCAGATAAAGCGATTGATGTGCTGGACACCGCTTGTGCCCGTATCGCCATCAACATGACCACGCC
GCCCAAACGTCTGGCGCTGCTCGAAACTGCGTGTCACCAACGTCAGTTGGAAATTGACATGCTGGAGCGCGCGCAATACC
TCGGTCGAGACGTTGATCATGCTCGTCTGGATGAACTGCGCACTCAGGAACTGGCAGACGAAGCGGAAAAAGCCGCGCTG
ACCGCAAGCTGGCAGCAACAAAAAGAATTGATTGAGTCGATCATCAGTCTGCGAGCGGAACTCATGGCCATGTCGACGGC
AGATGATGTGGAAGAGGATGCTCGCGCGGCACTGCAAGCTGAACTCAACACGCAATATCAAACGCTGGCGGCGATTGCGC
ACCATGAGCGTTTGATGCACCCCCAAGTCGATGCAGAGCAAATCGCTGAAGTGATTGCCGACTGGACGGGCGTTCCGGTT
GATCAAATGAACACCGATGAACTGCATAAAATTACCCACTTGACCGACATCCTCGGCGCAGCCATCAAAGGTCAAGATAC
TGCGATTGAGCGTGTTCATCGCCATTTGTTGACGGCGCGTGCGGATCTGCGCCGTCCGGGACGTCCGAAAGGCGCTTTCT
TGCTGGTGGGGCCGAGTGGCGTGGGTAAAACTGAAACGGTGGTGCAGCTTGCCGAACAGCTTTATGGCGGCAAGCAATTC
CTCACCACCATCAATATGTCGGAGTACCAAGAGAAGCATACAGTTTCTCGCTTGATCGGGTCACCGCCAGGCTATGTGGG
CTACGGCGAAGGGGGCATCCTGACCGAAGCGATTCGCAAAATGCCGTATTCCGTCGTGCTGCTGGACGAAGTGGAAAAAG
CCCACCCTGAAGTACTGAACATCTTTTACCAAGCGTTTGATAAAGGTGAGCTGGCTGATGGCGAAGGACGCTTAATCGAC
TGCCAAAATATTGTGTTCTTCCTCACCTCGAATCTTGGTTATCAAACCATCGTGGACTTCGCGGACGATCCCAAAGCTCT
GGATGAAGCGCTGTACCCCGAATTGGCCGCATTTTTTAAACCTGCGCTGTTGGCGCGTATGGAAGTGATTCCATATATGC
CACTCAACAAAGCGATTCTGGAGCTGATCGTCAAAGGCAAACTGGCACGTCTGGAGAAACTGTTCCGCGATCGCTACAAC
GCTGAGGTGGTGATTGAAGATCGCCTGATTGAAGAGATCTTAAATCGCGCCACGCGCAGCGAAAACGGTGCTCGCATGCT
TGAAGCCATCATTGAAGGTCAACTGTTGCCGCCTGTGTCGCTGGCGCTGTTGAATAAACTGGCAGAGAAGCAACCCGTGC
ATCGCATTCATTTGGATGCGCTGGACGGTGAATTTAAAGGAGAGGTGGCGTAA