Detailed information of component protein


Summary

Component ID T6CP005620
Component protein type TssC
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21015
Coordinate (Strand) 1233419..1234894 (+)
NCBI ID WP_004727194.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.5e-126 65..364
VipB_2 PF18945.2 2.5e-45 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 492 a.a.    

>T6CP005620 NC_016628:1233419-1234894 [Vibrio furnissii NCTC 11218] [TssC]
MSTTETVLERPQLAEGSLLDEIMAQTRIAPSEEGYDVAKKGVAAFIENLIGGNQLDEAVNKSLVDQMLVELDKKISAQMD
EILHDQQYQQMESAWRGLKLFVDRTDFRENNKVELLHVTKEELLEDFEFAPDTTQSGLYKHVYSSGYGQFGGEPTGAIVG
NFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPQFFGIDSFEELPNIKDIKSTFESPKYTKWRALRESEDARYIGLTAP
RFLLRVPYDPTENPIKSFNYSENVSQSHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKAKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAAKIEVMDVEGNPGWYQVSLAVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP005620 NC_016628:1233419-1234894 [Vibrio furnissii NCTC 11218] [TssC]
ATGTCTACGACTGAAACGGTACTGGAAAGACCGCAGCTGGCTGAAGGAAGCTTGCTGGACGAAATTATGGCGCAAACCCG
AATCGCTCCTAGCGAAGAAGGGTACGATGTTGCGAAAAAAGGGGTGGCTGCATTTATCGAAAATCTGATTGGTGGCAACC
AATTGGATGAAGCGGTGAATAAGTCTCTGGTTGACCAAATGTTGGTTGAGCTGGACAAGAAAATCAGCGCACAGATGGAT
GAAATTCTCCACGATCAGCAATACCAGCAAATGGAATCGGCTTGGCGTGGTCTGAAACTATTCGTGGATCGCACCGATTT
CCGTGAAAATAACAAAGTTGAACTGCTGCACGTCACCAAAGAAGAGCTGCTGGAAGACTTTGAATTTGCACCGGACACAA
CTCAATCTGGCTTGTACAAACACGTTTATTCCTCCGGTTATGGCCAGTTTGGTGGTGAACCGACCGGCGCGATCGTGGGT
AACTTCGCATTTACCCCTTCGACGCCAGACATGAAACTGCTGCAATACATGGGTGCCCTCGGCGCGATGGCGCATGCGCC
GTTCATCTCCAGCGTTGGCCCCCAATTCTTTGGCATCGATTCATTTGAAGAACTGCCAAACATCAAAGATATCAAGTCAA
CGTTTGAAAGCCCGAAATACACCAAATGGCGTGCGCTGCGTGAGTCAGAAGACGCGCGTTACATTGGCCTGACGGCGCCT
CGTTTCCTGTTGCGTGTTCCTTATGACCCAACAGAAAACCCAATCAAATCATTCAACTATTCAGAGAACGTGAGCCAATC
ACACGAGCATTACCTATGGGGTAATACGGCGTTTGCATTCGCGACTCGTTTGACAGATAGCTTCGCGAAATACCGCTGGT
GTCCAAACATCATTGGTCCACAAAGTGGCGGCGCGGTGGAAGATCTGCCAGTGCACGTATTTGAATCTATGGGTGCGCTA
CAAAGCAAGATCCCAACGGAAGTGTTGATCACCGACCGTAAAGAATTTGAACTGGCGGAAGAAGGCTTCATTGCCCTGAC
GATGCGTAAGGGCAGCGACAACGCCGCATTCTTCTCGGCAAACTCCATTCAGAAAGCCAAAATCTTCCCGAACACCAAGG
AAGGCAAAGAAGCTGAAACCAACTACAAGTTGGGCACGCAACTGCCTTACATGATGATCATCAACCGCTTGGCGCATTAC
GTGAAAGTGCTGCAACGTGAACAGATTGGTGCATGGAAAGAGCGCCAAGATCTGGAACGCGAGCTGAACTCGTGGATCAA
GCAATACGTTGCGGATCAGGAAAACCCGCCGGCAGACGTACGCAGCCGCCGCCCACTTCGCGCCGCGAAAATCGAGGTGA
TGGATGTGGAAGGCAATCCAGGTTGGTACCAAGTGTCTCTGGCTGTTCGTCCGCACTTTAAATACATGGGTGCGAACTTC
GAACTGTCGCTGGTAGGCCGTCTGGATCAAGCATAA