Detailed information of component protein
Summary
| Component ID | T6CP005619 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21010 |
| Coordinate (Strand) | 1232863..1233372 (+) |
| NCBI ID | WP_004727195.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.4e-56 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 170 a.a.
>T6CP005619 NC_016628:1232863-1233372 [Vibrio furnissii NCTC 11218] [TssB]
MSKEGSVAPKERINIKYIPATGDTQAEVELPLKTLVVGDFKGHSEETPVEERSTVSVDKNNFEAVMRESNLKLTTTVKNK
LGEDETADLPVELNFKSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQDLLNSEESREKLLAELNLV
SESEEETQA*
MSKEGSVAPKERINIKYIPATGDTQAEVELPLKTLVVGDFKGHSEETPVEERSTVSVDKNNFEAVMRESNLKLTTTVKNK
LGEDETADLPVELNFKSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQDLLNSEESREKLLAELNLV
SESEEETQA*
Nucleotide sequence: 510 bp
>T6CP005619 NC_016628:1232863-1233372 [Vibrio furnissii NCTC 11218] [TssB]
ATGTCTAAAGAAGGAAGTGTAGCTCCGAAAGAGCGCATTAATATTAAGTATATTCCTGCGACTGGGGATACACAGGCTGA
AGTGGAATTGCCATTGAAAACCTTAGTGGTTGGTGATTTCAAAGGTCATTCAGAAGAGACGCCAGTTGAAGAGCGCTCAA
CCGTTTCTGTGGATAAGAACAACTTTGAAGCGGTGATGCGTGAAAGCAATCTGAAACTGACCACCACCGTGAAGAACAAA
CTGGGTGAAGATGAGACTGCCGATTTACCGGTTGAGCTGAACTTCAAATCCCTTGCGGATTTCTCCCCAGATTCTGTCGC
TTCACAAGTTCCTGAATTAAAAAAATTGATTGAGTTACGCGAGGCGCTCGTCGCGCTGAAAGGCCCGCTGGGTAATATTC
CTGCGTTCCGTGAGCGCCTGCAAGATCTGCTGAACTCGGAAGAGTCACGCGAGAAACTGCTGGCAGAACTCAATCTTGTT
AGTGAATCAGAAGAAGAAACTCAAGCCTAA
ATGTCTAAAGAAGGAAGTGTAGCTCCGAAAGAGCGCATTAATATTAAGTATATTCCTGCGACTGGGGATACACAGGCTGA
AGTGGAATTGCCATTGAAAACCTTAGTGGTTGGTGATTTCAAAGGTCATTCAGAAGAGACGCCAGTTGAAGAGCGCTCAA
CCGTTTCTGTGGATAAGAACAACTTTGAAGCGGTGATGCGTGAAAGCAATCTGAAACTGACCACCACCGTGAAGAACAAA
CTGGGTGAAGATGAGACTGCCGATTTACCGGTTGAGCTGAACTTCAAATCCCTTGCGGATTTCTCCCCAGATTCTGTCGC
TTCACAAGTTCCTGAATTAAAAAAATTGATTGAGTTACGCGAGGCGCTCGTCGCGCTGAAAGGCCCGCTGGGTAATATTC
CTGCGTTCCGTGAGCGCCTGCAAGATCTGCTGAACTCGGAAGAGTCACGCGAGAAACTGCTGGCAGAACTCAATCTTGTT
AGTGAATCAGAAGAAGAAACTCAAGCCTAA