Detailed information of component protein


Summary

Component ID T6CP008960
Component protein type TssA
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (426 a.a.); Nucleotide sequence (1278 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21080
Coordinate (Strand) 1252090..1253367 (+)
NCBI ID WP_014258001.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 4.1e-08 22..99
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 426 a.a.    

>T6CP008960 NC_016628:1252090-1253367 [Vibrio furnissii NCTC 11218] [TssA]
MSNILFIDNAYYRLTNDTDAIRQLDVYQKIRDEINRRFNPLAGGTDWEVVRESCDALAKRAGLDLLMCGYFAVANLKTVG
LAGYANGLELLSVSLSNQSQPDVKTAKMRKEVLDWVNARVVQELKDLKPNYESLRDLYRCERFCERIHHQLERQQPEYLV
DFEGVGFALFEHIDRIETQYHSLVKRQHQQAGDAEPQVQRRVHRMRLSLAFVTGCVLSVGAVWAYQVIPWFHTSDYAMRV
EVATLSSDDARRHFQQSVSDNQIARWKSNLVPLYEQSIGQKSAISMEQSKREAMHEMATLRTLYPDDEQIKTSDEAFSAA
QRAALEQTELFVQRFGEIRTKMANISLLAKREKWRDLQRQTKSLEDFAVSLSPVYGRVDYVQNLIKQGELESARKELEIL
KTRLNNLSWTMAQLEESLSGQPIAQ*

  Nucleotide sequence: 1278 bp    

>T6CP008960 NC_016628:1252090-1253367 [Vibrio furnissii NCTC 11218] [TssA]
ATGTCCAACATTTTATTTATTGATAACGCTTACTATCGTTTGACCAATGACACCGATGCCATTCGTCAACTGGATGTTTA
CCAGAAAATCAGAGATGAGATTAACCGTCGATTTAATCCGTTAGCGGGGGGAACCGATTGGGAAGTCGTGCGCGAATCTT
GTGACGCGTTGGCAAAGCGTGCCGGGCTGGACCTGTTGATGTGCGGTTACTTTGCGGTCGCCAATCTAAAAACGGTGGGA
TTAGCGGGGTATGCCAACGGGTTGGAATTACTGAGTGTCAGTTTGAGCAATCAAAGTCAGCCGGATGTGAAAACCGCCAA
GATGCGTAAAGAAGTCTTGGATTGGGTCAACGCCCGAGTGGTGCAGGAGCTCAAAGACCTGAAGCCCAACTACGAATCGC
TACGCGATTTATATCGTTGCGAACGTTTTTGCGAACGTATCCACCATCAGCTTGAGCGGCAGCAACCGGAGTATTTGGTG
GATTTCGAAGGCGTCGGGTTTGCGCTCTTTGAACACATCGACCGCATTGAAACCCAATATCACAGCCTAGTGAAACGGCA
ACACCAACAGGCGGGGGACGCAGAGCCACAAGTGCAGAGGCGAGTGCATCGCATGCGATTGTCGCTGGCCTTTGTGACGG
GTTGTGTTTTGTCTGTGGGCGCGGTGTGGGCATATCAGGTGATTCCGTGGTTTCACACCAGCGATTACGCCATGCGTGTT
GAGGTCGCGACGCTCAGCAGTGACGATGCGCGCCGCCATTTTCAACAGTCTGTGTCTGACAATCAAATTGCACGTTGGAA
AAGCAATCTGGTGCCACTTTATGAGCAATCAATCGGGCAAAAAAGCGCTATTTCGATGGAACAGAGCAAACGCGAAGCGA
TGCATGAAATGGCAACACTACGCACACTCTATCCAGATGATGAGCAAATTAAAACAAGCGATGAAGCGTTTAGTGCAGCG
CAGCGAGCTGCACTGGAGCAAACAGAACTGTTTGTGCAGCGATTTGGTGAAATTCGTACCAAGATGGCCAATATTTCGCT
GTTGGCCAAGCGCGAAAAATGGCGTGATTTACAGCGCCAGACCAAATCGTTGGAAGATTTTGCTGTGAGTTTGTCGCCGG
TCTATGGCCGGGTCGATTATGTGCAGAATCTGATTAAGCAAGGCGAACTCGAATCGGCGCGCAAAGAGTTGGAGATTCTG
AAAACTCGTCTCAATAATTTGAGCTGGACGATGGCTCAACTGGAAGAGTCGTTGAGTGGGCAGCCAATCGCGCAATAG