Detailed information of component protein


Summary

Component ID T6CP005628
Component protein type TssI
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (1074 a.a.); Nucleotide sequence (3222 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21085
Coordinate (Strand) 1253554..1256775 (+)
NCBI ID WP_014258002.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1e-75 45..339
Phage_base_V PF04717.14 8.7e-14 397..463
PG_binding_1 PF01471.20 1.3e-07 754..795
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1074 a.a.    

>T6CP005628 NC_016628:1253554-1256775 [Vibrio furnissii NCTC 11218] [TssI]
MATLKYQFHVEGLEDDTLVVCEFEGQETLSSERMNGQLLNEQPCHGFRYELALASRHANLTPEMVVDKVAELTLYRDDVL
VQRVNGIVRCFTQGDTGHHHTFYSLTLVPALERLSLRHNSRIFQLKTVPEILSILLQEMSINDYAFALTRDCAQREFCVQ
YRETDLDFLHRLAAEEGLVYSFIHEEGKHTLIFSDASDSLPKLGEPIPYNTLAGGMIESPYISALSVHTQSEVSQTALQD
YSFKKPTYSFAQQAVGTEMDYQQPDYEHFDAPGRYKDDVSGKAFSQIRLDYLRRNAHTATGKSNQPLLRPGVKFDLQEHL
DDTLNRDWLVVRVTCQGTQPQALEEAGGNGATTYANQFSLIPAHRTWRATPQVKPQVDGPMIATVVGPEGEEIFCDEHGR
VKLHFPWDRYSNGDEHSSCWVRVSQGWAGSQYGMIAIPRIGHEVIVSFLNGDPDQPIVTGRTYHATNTAPYTLPDNKTKT
VLRTETHQGQGYNELSFEDQAGSEQIYLHAQKDFDGLIENDHTSVIKHDKHLTVENDRFTQIKNNQHLTLGGESRTKIVA
DRSVEIAGASQNKVAKLIAVQAGREISLKGGTKIVVEAGAEVTLKAGGSFVKVDAGGVHLSGSAINLNAGGSAGSGSGYG
GKSALFAKNLVSLESPAELQQAAIQSTQVAGEANVVTVSELVAPVLGEGAQQQSASSQAASGSAVNSTQAEPQAENDVES
TKEPRLKSDVLKPSETLNQLADREVASYKTGSKGQEVELIQNALIKLGFDLGTYGADGSFGNTTERQVKMFQQSYTPSHS
THPDYKVGKVDGIVGQGTLLGLDEALVDGWVCDLITKGMLDTVCPGSGNDQSLLAALNKYCPLYEINTPVRISHFLAQVA
HESGCFSSLVEGSNYQHMAAKIKFSKYRAYVNSLKPGSVNRFLREDNPSRCKQPDLFNFVYSDSNGNGDESSGDGYKYRG
RGLIQITGKGKYEKFTTTHNAKSTDDLRDFSTMPELVSDNIDYAVESACMYWRNWGALSKKFNANGDINVLIDNAPDDIK
LVSQAVNGGTYGSSNGLEDRMNKFDKLKIYFGL*

  Nucleotide sequence: 3222 bp    

>T6CP005628 NC_016628:1253554-1256775 [Vibrio furnissii NCTC 11218] [TssI]
ATGGCGACGTTAAAGTATCAGTTTCATGTGGAAGGTCTGGAGGACGACACGCTGGTGGTGTGTGAGTTCGAGGGGCAGGA
GACGCTTTCTAGCGAACGCATGAATGGGCAGTTATTGAATGAACAACCGTGCCACGGGTTTCGTTATGAATTGGCGCTCG
CCAGTCGGCATGCCAACCTAACGCCCGAGATGGTGGTAGATAAAGTCGCGGAGCTGACGCTCTATCGCGATGATGTGCTG
GTTCAACGCGTAAACGGCATCGTGCGCTGCTTTACGCAGGGCGATACCGGCCATCACCATACCTTTTATTCACTCACGTT
AGTCCCTGCTTTAGAGCGTTTGTCTCTGCGCCATAACAGCCGCATCTTCCAACTTAAAACTGTGCCGGAAATCCTCTCTA
TCCTGCTGCAGGAAATGAGTATCAACGATTACGCCTTTGCGCTGACTCGCGACTGCGCGCAGCGTGAATTCTGCGTTCAG
TACCGCGAAACTGATTTAGATTTTCTCCATCGCTTAGCGGCCGAAGAAGGGTTGGTGTACAGCTTCATTCATGAAGAAGG
CAAGCATACACTGATATTCAGCGACGCCTCAGACAGCCTGCCGAAACTCGGTGAGCCAATTCCGTACAACACGCTGGCAG
GCGGCATGATTGAATCACCGTACATCTCAGCGTTGAGCGTGCACACCCAATCTGAGGTGAGCCAAACGGCGTTGCAGGAT
TACAGTTTCAAAAAGCCGACATACTCCTTTGCCCAGCAAGCGGTCGGGACCGAAATGGACTACCAGCAGCCAGACTACGA
ACATTTCGATGCGCCGGGGCGGTATAAAGACGATGTCAGCGGCAAAGCGTTCAGCCAGATCCGCCTTGATTACCTGCGCC
GCAACGCGCACACCGCAACGGGCAAAAGTAATCAACCGCTGCTGCGTCCGGGGGTAAAGTTTGACTTGCAAGAGCACCTC
GACGACACCTTAAACCGAGATTGGCTGGTGGTGCGTGTCACCTGCCAAGGCACGCAGCCTCAGGCGCTAGAAGAAGCGGG
CGGCAATGGCGCGACCACCTACGCGAACCAATTCTCGCTCATCCCGGCGCATCGCACCTGGCGTGCCACGCCGCAAGTCA
AACCTCAGGTTGATGGCCCGATGATCGCCACAGTCGTTGGGCCAGAAGGTGAAGAGATTTTCTGTGATGAACACGGCCGC
GTAAAACTGCATTTCCCTTGGGATCGCTATTCCAATGGTGATGAGCATAGCTCCTGCTGGGTGCGTGTCTCGCAAGGGTG
GGCGGGCAGCCAATACGGCATGATTGCCATTCCGCGCATTGGTCATGAAGTGATTGTGTCGTTTCTCAATGGCGACCCCG
ACCAACCAATTGTCACCGGTCGTACCTATCACGCCACCAACACTGCGCCGTATACGTTGCCAGACAACAAAACCAAAACT
GTGCTGCGCACCGAAACCCATCAAGGGCAGGGCTATAACGAACTCAGTTTTGAAGACCAAGCGGGCAGCGAACAAATTTA
CCTGCACGCGCAGAAAGACTTTGATGGCCTGATTGAAAACGACCACACCAGCGTCATAAAGCACGACAAACACCTCACGG
TGGAGAACGATCGCTTTACTCAGATCAAAAACAATCAACATCTGACGTTGGGCGGCGAAAGCCGCACTAAAATCGTAGCT
GACCGTAGTGTTGAGATTGCTGGCGCTTCACAAAACAAAGTCGCGAAGCTGATTGCGGTGCAAGCTGGGCGTGAAATTTC
ACTGAAAGGTGGCACCAAAATTGTGGTCGAAGCTGGTGCAGAGGTCACCTTAAAGGCTGGAGGAAGTTTTGTGAAGGTCG
ACGCCGGTGGCGTCCACCTTTCAGGATCTGCGATTAACCTCAATGCCGGGGGAAGTGCAGGCAGTGGGAGTGGTTATGGC
GGCAAGTCCGCCCTGTTTGCCAAGAATCTTGTCAGTTTGGAATCGCCAGCAGAATTGCAACAGGCGGCGATTCAATCCAC
CCAAGTTGCTGGTGAGGCAAATGTCGTGACCGTGTCTGAACTGGTGGCTCCCGTCTTAGGCGAGGGCGCTCAACAGCAGA
GCGCATCATCTCAGGCAGCATCGGGTTCAGCGGTAAATTCAACGCAAGCCGAGCCGCAAGCGGAGAACGACGTTGAATCC
ACGAAAGAACCTCGACTGAAATCTGATGTGTTGAAACCTTCCGAAACGCTCAATCAATTGGCAGACCGTGAAGTTGCTTC
CTACAAAACGGGTTCAAAAGGTCAAGAAGTTGAATTGATTCAGAACGCACTGATAAAACTGGGGTTTGATCTCGGTACCT
ACGGCGCAGATGGTAGTTTTGGCAATACAACGGAGCGCCAAGTCAAAATGTTTCAGCAAAGCTATACGCCGTCCCATTCG
ACACATCCTGACTATAAAGTCGGCAAGGTTGATGGCATTGTGGGGCAAGGAACCTTGCTGGGCTTGGATGAAGCATTGGT
TGATGGGTGGGTTTGTGACCTGATTACTAAAGGTATGTTGGACACTGTTTGTCCAGGTTCGGGAAACGATCAGAGCTTAT
TGGCAGCATTAAATAAATATTGTCCATTGTACGAGATCAATACGCCTGTTCGAATTAGCCACTTTCTTGCTCAGGTGGCC
CATGAAAGTGGTTGCTTTAGTAGTCTTGTTGAAGGCAGCAACTATCAACATATGGCAGCAAAAATCAAATTTTCAAAGTA
TAGAGCTTACGTAAATTCATTGAAACCTGGATCAGTAAATCGATTTTTACGAGAAGACAATCCGTCAAGATGCAAGCAAC
CAGATCTGTTTAACTTTGTCTATTCAGATAGCAATGGGAATGGTGATGAAAGCTCAGGGGATGGGTACAAATATCGAGGT
AGAGGGCTGATTCAGATTACAGGTAAAGGAAAGTATGAAAAGTTCACGACTACGCACAACGCTAAAAGTACAGATGATCT
TCGAGATTTTTCAACGATGCCAGAGTTAGTGTCGGATAATATTGATTATGCTGTAGAATCTGCATGTATGTATTGGCGAA
ATTGGGGTGCTTTATCTAAGAAGTTTAATGCGAATGGAGACATCAATGTTCTGATAGATAATGCTCCGGATGATATAAAG
TTGGTAAGCCAAGCGGTAAATGGTGGAACTTACGGAAGTTCTAATGGATTAGAGGACCGTATGAACAAGTTTGATAAATT
AAAAATTTATTTTGGATTGTGA