Detailed information of component protein
Summary
| Component ID | T6CP011966 |
| Component protein type | FHA |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (496 a.a.); Nucleotide sequence (1488 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21035 |
| Coordinate (Strand) | 1238093..1239580 (+) |
| NCBI ID | WP_014257994.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| FHA | PF00498.28 | 6e-06 | 36..102 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 496 a.a.
>T6CP011966 NC_016628:1238093-1239580 [Vibrio furnissii NCTC 11218] [FHA]
MNAMTQTSLILQVANVQLLESGLTAQSHWTPEGGNIGSESWATWRLKDAQGRVKPQHCAIVSIDGAFCVRDLCGDTYVNG
SHMPLGKDQLAKLEHRDEITVGPYQLRVSFGHADEHDRNAGPLDAMFKADQVDLLADDPFDDEALEDEAPLAANADPLLA
LDALLEAKDDAEALLRDVERLDDSDQSHALVPEENLVLHDLKFTPQADSEYEMTSSIRLKKILGFGPRKDDVAQPDIAPA
HQPQSPQQTTTAPSSPINTHNVSEGLTMDEKVLDLLEEEVARSLQPANADTATSSAGGKHLLTGPMLQGLGIDLSQDTDM
ERMHFLSQELGESLQACVKGLLELHQQVSDGRFGTMNRNLQPIEDNPLRLGLSYEQTIRTMYDADKSLVHLSAPAAISES
LKNVRDHNEAMQHATSEALNQILNAFSPQVLLRRFHHYKRNTDTSATSDEAWAWNMYCNYYQELTSNRQRGFEKLFWEIF
EQAYDKKIREKQLEL*
MNAMTQTSLILQVANVQLLESGLTAQSHWTPEGGNIGSESWATWRLKDAQGRVKPQHCAIVSIDGAFCVRDLCGDTYVNG
SHMPLGKDQLAKLEHRDEITVGPYQLRVSFGHADEHDRNAGPLDAMFKADQVDLLADDPFDDEALEDEAPLAANADPLLA
LDALLEAKDDAEALLRDVERLDDSDQSHALVPEENLVLHDLKFTPQADSEYEMTSSIRLKKILGFGPRKDDVAQPDIAPA
HQPQSPQQTTTAPSSPINTHNVSEGLTMDEKVLDLLEEEVARSLQPANADTATSSAGGKHLLTGPMLQGLGIDLSQDTDM
ERMHFLSQELGESLQACVKGLLELHQQVSDGRFGTMNRNLQPIEDNPLRLGLSYEQTIRTMYDADKSLVHLSAPAAISES
LKNVRDHNEAMQHATSEALNQILNAFSPQVLLRRFHHYKRNTDTSATSDEAWAWNMYCNYYQELTSNRQRGFEKLFWEIF
EQAYDKKIREKQLEL*
Nucleotide sequence: 1488 bp
>T6CP011966 NC_016628:1238093-1239580 [Vibrio furnissii NCTC 11218] [FHA]
ATGAACGCAATGACTCAGACGTCACTGATCCTTCAAGTGGCCAACGTACAACTGCTCGAATCGGGTTTGACCGCCCAATC
GCACTGGACGCCAGAAGGCGGCAATATTGGCTCCGAATCATGGGCAACTTGGCGACTCAAAGACGCGCAAGGCCGCGTGA
AACCTCAGCATTGTGCCATTGTCTCGATTGATGGCGCGTTTTGTGTCCGTGATTTGTGTGGTGACACCTATGTGAATGGT
TCACACATGCCGCTGGGTAAAGATCAGTTAGCAAAGCTGGAGCATCGAGACGAAATCACCGTGGGGCCTTATCAGCTACG
AGTTTCGTTTGGTCATGCGGATGAGCACGACCGCAATGCTGGCCCGTTGGATGCGATGTTTAAAGCGGATCAGGTCGATC
TGCTGGCGGATGACCCCTTCGATGATGAAGCACTAGAAGACGAGGCACCGCTTGCGGCGAATGCTGATCCGCTCTTGGCA
CTGGATGCGCTACTTGAGGCCAAAGACGACGCCGAAGCGCTGCTGCGCGATGTGGAACGACTAGACGACAGTGACCAGTC
GCATGCATTGGTGCCGGAAGAGAACTTGGTGCTTCATGATTTGAAATTTACCCCGCAGGCAGACAGCGAGTACGAAATGA
CGTCATCCATTCGATTGAAAAAAATTCTGGGCTTTGGCCCGCGTAAAGACGATGTCGCGCAACCGGACATCGCGCCAGCG
CATCAGCCTCAGTCACCACAACAAACAACAACAGCACCATCATCACCAATCAACACTCACAACGTATCAGAGGGCTTAAC
AATGGATGAAAAAGTATTGGATCTTCTTGAAGAAGAAGTCGCCAGAAGTCTGCAACCTGCCAACGCCGACACTGCCACAA
GTTCTGCGGGTGGCAAACATTTGCTGACCGGCCCAATGCTGCAGGGGCTGGGGATCGATCTCAGTCAGGACACTGACATG
GAACGCATGCACTTCTTGTCTCAAGAATTGGGTGAGTCGCTGCAGGCGTGTGTGAAAGGCTTGCTGGAACTGCATCAACA
AGTGAGTGACGGTCGCTTCGGAACCATGAACCGCAACCTGCAACCCATTGAAGATAACCCGCTGCGCTTGGGTCTGTCTT
ATGAACAAACCATTCGCACCATGTACGATGCCGACAAGAGTTTGGTCCACCTCTCTGCACCGGCGGCGATTTCAGAAAGC
CTGAAGAACGTCCGCGACCACAACGAAGCGATGCAACACGCCACCTCGGAAGCGCTGAATCAGATTCTGAACGCCTTCTC
TCCACAAGTGTTGCTGCGCCGCTTCCATCACTACAAACGTAATACAGACACCAGTGCCACTTCGGATGAAGCGTGGGCGT
GGAACATGTACTGCAACTACTACCAAGAGCTGACTTCCAACCGTCAACGCGGTTTTGAAAAGCTGTTCTGGGAAATTTTC
GAACAGGCTTACGACAAGAAAATTCGTGAGAAGCAACTGGAGCTCTAA
ATGAACGCAATGACTCAGACGTCACTGATCCTTCAAGTGGCCAACGTACAACTGCTCGAATCGGGTTTGACCGCCCAATC
GCACTGGACGCCAGAAGGCGGCAATATTGGCTCCGAATCATGGGCAACTTGGCGACTCAAAGACGCGCAAGGCCGCGTGA
AACCTCAGCATTGTGCCATTGTCTCGATTGATGGCGCGTTTTGTGTCCGTGATTTGTGTGGTGACACCTATGTGAATGGT
TCACACATGCCGCTGGGTAAAGATCAGTTAGCAAAGCTGGAGCATCGAGACGAAATCACCGTGGGGCCTTATCAGCTACG
AGTTTCGTTTGGTCATGCGGATGAGCACGACCGCAATGCTGGCCCGTTGGATGCGATGTTTAAAGCGGATCAGGTCGATC
TGCTGGCGGATGACCCCTTCGATGATGAAGCACTAGAAGACGAGGCACCGCTTGCGGCGAATGCTGATCCGCTCTTGGCA
CTGGATGCGCTACTTGAGGCCAAAGACGACGCCGAAGCGCTGCTGCGCGATGTGGAACGACTAGACGACAGTGACCAGTC
GCATGCATTGGTGCCGGAAGAGAACTTGGTGCTTCATGATTTGAAATTTACCCCGCAGGCAGACAGCGAGTACGAAATGA
CGTCATCCATTCGATTGAAAAAAATTCTGGGCTTTGGCCCGCGTAAAGACGATGTCGCGCAACCGGACATCGCGCCAGCG
CATCAGCCTCAGTCACCACAACAAACAACAACAGCACCATCATCACCAATCAACACTCACAACGTATCAGAGGGCTTAAC
AATGGATGAAAAAGTATTGGATCTTCTTGAAGAAGAAGTCGCCAGAAGTCTGCAACCTGCCAACGCCGACACTGCCACAA
GTTCTGCGGGTGGCAAACATTTGCTGACCGGCCCAATGCTGCAGGGGCTGGGGATCGATCTCAGTCAGGACACTGACATG
GAACGCATGCACTTCTTGTCTCAAGAATTGGGTGAGTCGCTGCAGGCGTGTGTGAAAGGCTTGCTGGAACTGCATCAACA
AGTGAGTGACGGTCGCTTCGGAACCATGAACCGCAACCTGCAACCCATTGAAGATAACCCGCTGCGCTTGGGTCTGTCTT
ATGAACAAACCATTCGCACCATGTACGATGCCGACAAGAGTTTGGTCCACCTCTCTGCACCGGCGGCGATTTCAGAAAGC
CTGAAGAACGTCCGCGACCACAACGAAGCGATGCAACACGCCACCTCGGAAGCGCTGAATCAGATTCTGAACGCCTTCTC
TCCACAAGTGTTGCTGCGCCGCTTCCATCACTACAAACGTAATACAGACACCAGTGCCACTTCGGATGAAGCGTGGGCGT
GGAACATGTACTGCAACTACTACCAAGAGCTGACTTCCAACCGTCAACGCGGTTTTGAAAAGCTGTTCTGGGAAATTTTC
GAACAGGCTTACGACAAGAAAATTCGTGAGAAGCAACTGGAGCTCTAA