Detailed information of component protein
Summary
| Component ID | T6CP005627 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (1167 a.a.); Nucleotide sequence (3501 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21075 |
| Coordinate (Strand) | 1248537..1252037 (+) |
| NCBI ID | WP_193386135.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| IcmF-related_N | PF14331.8 | 6.2e-75 | 188..444 |
| IcmF-related | PF06761.14 | 2e-73 | 495..809 |
| IcmF_C | PF06744.14 | 5.5e-23 | 1039..1145 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1167 a.a.
>T6CP005627 NC_016628:1248537-1252037 [Vibrio furnissii NCTC 11218] [TssM]
MVAALPILLFTTFILLNVAIWWAGPWLEVSGHKPLESVGARAVASSLFTLGAFAVWGFWQWRKLQGYQAQQKRDEQLRQD
PIQLFEERQEVELNQVMVNMKQNLNKRNYLYALPWYLVLGLENAGKTSLINRSGQKFVFSSVMRASGQKSENPYSFDWWI
GDESVLIDPDGELLTQGNRSEDNDGAMERRLWLHFVNWLDRTRSRRPLNGIVLALDVSHLATATASERKAYASLLRARLR
ELMETLSTRLPVYIALTKLDLLYGFEPFFKHYTKSQREEVLGFTFSLDSIDNLDHWLEEFAKEYAEFVERIHGVLPHAVS
APMSLDERNAIYSFTRQISGLKEILTQFFQDALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAVNTAQ
RAKNSTIYFTQKLFSNIIYPEAGLASDNFRIARQKRRLIALSFLTCSIATVLLAGTWHRNYLANIKHSDAVLAKVNQYND
QYPSNVYLASQKDVLEPLNKIREATLEFGFFREKPRFISDFGLYQGHTIGPMVEATYLNLLESRFLPLLMADVVVDLNQA
QTDEEKLAVLRVYRMMVDKSGRYKDYVMDYFAKYWQQEFSGRREIQEELLGHLDYAMRHTDLAGERARGDKVANQVMKPY
DNTIANVQRDLGSMPNDQRVYRNLKLNAQTVLGPAINLRNLVGPVFDVVFEERVMNSSTLYIPQMLTKRGFEDYFMPQSE
SVSELALIDSWVLGQSKSAQFSEADKQALRDKIRNLYVADYTNTWRAALNEIDMKYFSDINDAVTVLDNLTGNIEPLQRL
LRTLDDNTKMFAALPKDDSAQKELLKSPKYKVASMIEAPFSDLNNMIKPVGDKPAYLHEVLASVEELKNYLKSIQDAPDV
GMAALDATKARVKLVNADPIYTLKRIASGLPKPLDTMVAKLADESWYVVKQEAIKHLEVRWHEDVYKTFEEKLAGRYPFN
AASKKDASLEDFEAFFAPNGTLDSFYNNQLRMFIEENITVNNDDTSQSIIRKDVLSQIKQAQKIREAFFNRKGILDVSFS
VEPLRLSGNKRRSVLNVDGQYLAYSHGPRDSVELIWPNTLRDSAVSKVTLVPTQTNMSPRSINIQGPWAFFRLLDQGDVV
AASTTSVDYKFAVDGGDMIYRINAEADANPFTERLFRSFKLSKTLY*
MVAALPILLFTTFILLNVAIWWAGPWLEVSGHKPLESVGARAVASSLFTLGAFAVWGFWQWRKLQGYQAQQKRDEQLRQD
PIQLFEERQEVELNQVMVNMKQNLNKRNYLYALPWYLVLGLENAGKTSLINRSGQKFVFSSVMRASGQKSENPYSFDWWI
GDESVLIDPDGELLTQGNRSEDNDGAMERRLWLHFVNWLDRTRSRRPLNGIVLALDVSHLATATASERKAYASLLRARLR
ELMETLSTRLPVYIALTKLDLLYGFEPFFKHYTKSQREEVLGFTFSLDSIDNLDHWLEEFAKEYAEFVERIHGVLPHAVS
APMSLDERNAIYSFTRQISGLKEILTQFFQDALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAVNTAQ
RAKNSTIYFTQKLFSNIIYPEAGLASDNFRIARQKRRLIALSFLTCSIATVLLAGTWHRNYLANIKHSDAVLAKVNQYND
QYPSNVYLASQKDVLEPLNKIREATLEFGFFREKPRFISDFGLYQGHTIGPMVEATYLNLLESRFLPLLMADVVVDLNQA
QTDEEKLAVLRVYRMMVDKSGRYKDYVMDYFAKYWQQEFSGRREIQEELLGHLDYAMRHTDLAGERARGDKVANQVMKPY
DNTIANVQRDLGSMPNDQRVYRNLKLNAQTVLGPAINLRNLVGPVFDVVFEERVMNSSTLYIPQMLTKRGFEDYFMPQSE
SVSELALIDSWVLGQSKSAQFSEADKQALRDKIRNLYVADYTNTWRAALNEIDMKYFSDINDAVTVLDNLTGNIEPLQRL
LRTLDDNTKMFAALPKDDSAQKELLKSPKYKVASMIEAPFSDLNNMIKPVGDKPAYLHEVLASVEELKNYLKSIQDAPDV
GMAALDATKARVKLVNADPIYTLKRIASGLPKPLDTMVAKLADESWYVVKQEAIKHLEVRWHEDVYKTFEEKLAGRYPFN
AASKKDASLEDFEAFFAPNGTLDSFYNNQLRMFIEENITVNNDDTSQSIIRKDVLSQIKQAQKIREAFFNRKGILDVSFS
VEPLRLSGNKRRSVLNVDGQYLAYSHGPRDSVELIWPNTLRDSAVSKVTLVPTQTNMSPRSINIQGPWAFFRLLDQGDVV
AASTTSVDYKFAVDGGDMIYRINAEADANPFTERLFRSFKLSKTLY*
Nucleotide sequence: 3501 bp
>T6CP005627 NC_016628:1248537-1252037 [Vibrio furnissii NCTC 11218] [TssM]
ATGGTGGCTGCTTTGCCGATTTTGCTATTCACCACGTTCATTTTACTGAACGTCGCAATTTGGTGGGCGGGCCCTTGGCT
AGAGGTTTCCGGTCACAAGCCGCTCGAGTCTGTGGGGGCTCGTGCGGTCGCAAGCAGCCTGTTTACTCTGGGCGCATTCG
CCGTTTGGGGCTTTTGGCAATGGCGTAAACTGCAAGGCTATCAAGCGCAGCAGAAACGTGATGAGCAACTGCGCCAAGAC
CCGATTCAGTTATTCGAGGAACGTCAGGAAGTCGAACTGAATCAGGTCATGGTCAACATGAAACAGAACCTCAATAAGCG
CAATTATTTGTATGCGCTACCGTGGTATCTGGTGTTGGGGCTAGAAAATGCGGGTAAAACCAGCCTGATTAACCGTTCCG
GCCAGAAATTTGTGTTCTCGTCGGTGATGCGTGCTTCAGGACAGAAAAGCGAAAATCCGTATTCGTTTGATTGGTGGATT
GGCGATGAATCGGTGTTGATTGACCCGGATGGTGAGCTGCTGACACAGGGCAATCGCAGTGAAGACAACGACGGAGCGAT
GGAGCGCCGTTTGTGGCTGCATTTTGTCAATTGGCTGGACAGAACTCGCAGTCGCCGCCCGCTGAACGGTATTGTATTGG
CGTTGGATGTGTCGCACTTGGCTACGGCAACGGCATCGGAGCGTAAAGCCTACGCTAGCCTGCTGCGCGCTCGTCTGCGT
GAGCTGATGGAAACTCTTTCAACGCGTTTGCCGGTGTACATTGCACTGACCAAACTTGATCTTCTGTATGGCTTTGAACC
GTTTTTCAAACACTACACCAAGAGCCAGCGTGAAGAAGTGCTGGGCTTCACCTTCTCACTGGATTCAATTGATAACTTGG
ATCACTGGTTGGAAGAGTTTGCCAAAGAATACGCCGAGTTTGTCGAGCGGATTCATGGGGTCTTACCCCATGCGGTTTCG
GCGCCAATGTCGCTGGATGAACGCAATGCCATCTACAGTTTCACGCGCCAGATCTCCGGTTTGAAAGAAATCCTGACGCA
ATTTTTCCAAGATGCTTTGGCGAGTGATCAGTTCTCCACTTCCGCACTGGTACGTGGGGCTTACTTTACTTCGGTGTATC
AGCAAGGTGTGCCGACCAATGCGTTCGATGATGCGGCGTCGCGCCGTTACGGTTTATCGCATGCGGTCAATACTGCTCAG
CGCGCGAAAAACTCAACCATCTATTTCACCCAGAAGCTGTTCAGTAACATCATTTATCCGGAAGCTGGACTGGCGTCGGA
TAACTTTCGAATTGCGCGCCAAAAGCGCCGCTTGATTGCGTTGTCGTTTCTCACTTGTTCGATTGCGACTGTGCTGCTGG
CCGGGACTTGGCATCGTAACTACTTGGCCAACATCAAGCATTCCGATGCGGTGCTGGCGAAGGTGAATCAGTACAACGAT
CAATACCCGTCCAATGTGTATCTGGCATCGCAAAAAGATGTGCTGGAGCCGCTGAACAAAATTCGTGAAGCCACGTTAGA
GTTTGGTTTCTTCCGTGAAAAACCGCGCTTTATTTCTGATTTTGGCCTGTATCAGGGCCATACCATCGGGCCGATGGTGG
AAGCGACGTATTTGAACCTGCTGGAAAGCCGTTTTCTGCCGCTGCTGATGGCGGATGTGGTGGTTGACCTGAATCAGGCG
CAAACGGATGAAGAAAAACTGGCGGTGCTGCGCGTGTATCGCATGATGGTAGATAAAAGCGGTCGCTACAAAGATTACGT
GATGGATTACTTTGCCAAATATTGGCAGCAGGAGTTCTCAGGTCGCCGTGAAATTCAGGAAGAACTGTTGGGTCACCTCG
ATTACGCCATGCGTCATACCGATTTAGCGGGTGAGCGTGCGCGCGGCGATAAAGTCGCCAATCAGGTGATGAAGCCGTAT
GACAATACCATCGCGAATGTGCAACGTGATTTGGGGTCAATGCCAAACGATCAACGTGTTTACCGTAACCTGAAGCTGAA
TGCGCAAACGGTGCTTGGCCCGGCGATCAACCTGCGTAATCTGGTGGGGCCGGTATTTGACGTGGTGTTTGAAGAGCGCG
TGATGAACAGCAGCACGCTGTACATTCCGCAAATGCTCACCAAGCGCGGCTTTGAAGATTACTTTATGCCGCAGTCTGAA
TCGGTGTCGGAACTGGCATTGATCGACAGTTGGGTTTTAGGGCAGTCGAAGTCGGCGCAGTTCAGTGAAGCGGACAAACA
AGCGCTGCGCGATAAGATTCGAAATCTGTACGTGGCGGATTACACCAACACTTGGCGTGCGGCGTTAAATGAAATCGACA
TGAAATATTTCAGCGATATCAATGATGCCGTCACGGTGCTGGACAACCTGACGGGCAACATCGAACCGCTGCAACGTCTG
CTGCGTACACTCGACGATAACACCAAGATGTTTGCCGCCTTGCCAAAAGACGACAGCGCGCAGAAAGAGCTGCTCAAGAG
TCCCAAATATAAAGTGGCCTCGATGATCGAAGCGCCGTTCTCTGATTTGAACAACATGATCAAACCTGTTGGTGATAAGC
CTGCGTATCTTCATGAAGTGTTGGCATCGGTGGAAGAGCTGAAGAACTACCTGAAATCCATTCAGGATGCACCGGATGTT
GGCATGGCAGCGCTTGATGCGACCAAAGCGCGAGTGAAGCTCGTCAATGCAGACCCAATCTATACCTTGAAACGCATCGC
GTCTGGCCTGCCCAAACCGCTCGATACGATGGTCGCCAAACTGGCGGATGAGAGCTGGTATGTGGTGAAACAAGAGGCGA
TCAAACACCTCGAAGTGCGTTGGCATGAAGATGTCTACAAGACGTTCGAAGAGAAACTGGCGGGGCGTTATCCGTTCAAT
GCCGCATCGAAAAAAGATGCGTCACTGGAAGATTTCGAAGCTTTCTTTGCTCCGAATGGTACGCTGGATAGCTTCTACAA
CAATCAGTTGCGCATGTTCATCGAAGAGAACATCACGGTGAATAACGACGACACCTCGCAGTCGATCATTCGCAAAGACG
TGCTCAGTCAGATCAAACAGGCGCAAAAAATCCGTGAAGCCTTCTTTAACCGCAAAGGCATTTTGGATGTCAGCTTCTCA
GTTGAACCGCTGCGTTTGAGTGGCAATAAACGCCGCAGTGTATTGAATGTCGATGGTCAATATCTGGCGTATAGCCATGG
TCCGCGCGATAGCGTGGAGCTGATTTGGCCAAACACGCTACGGGACTCGGCTGTGTCGAAAGTGACGCTGGTTCCGACCC
AAACCAACATGTCACCACGCAGCATCAATATTCAGGGGCCGTGGGCATTCTTCCGCCTGCTTGACCAAGGGGACGTGGTG
GCCGCGAGTACCACGTCGGTGGATTACAAATTTGCGGTGGATGGCGGCGATATGATTTACCGCATCAACGCTGAAGCCGA
TGCCAACCCATTTACGGAACGTCTGTTCAGATCGTTCAAACTGTCTAAAACCTTGTATTAA
ATGGTGGCTGCTTTGCCGATTTTGCTATTCACCACGTTCATTTTACTGAACGTCGCAATTTGGTGGGCGGGCCCTTGGCT
AGAGGTTTCCGGTCACAAGCCGCTCGAGTCTGTGGGGGCTCGTGCGGTCGCAAGCAGCCTGTTTACTCTGGGCGCATTCG
CCGTTTGGGGCTTTTGGCAATGGCGTAAACTGCAAGGCTATCAAGCGCAGCAGAAACGTGATGAGCAACTGCGCCAAGAC
CCGATTCAGTTATTCGAGGAACGTCAGGAAGTCGAACTGAATCAGGTCATGGTCAACATGAAACAGAACCTCAATAAGCG
CAATTATTTGTATGCGCTACCGTGGTATCTGGTGTTGGGGCTAGAAAATGCGGGTAAAACCAGCCTGATTAACCGTTCCG
GCCAGAAATTTGTGTTCTCGTCGGTGATGCGTGCTTCAGGACAGAAAAGCGAAAATCCGTATTCGTTTGATTGGTGGATT
GGCGATGAATCGGTGTTGATTGACCCGGATGGTGAGCTGCTGACACAGGGCAATCGCAGTGAAGACAACGACGGAGCGAT
GGAGCGCCGTTTGTGGCTGCATTTTGTCAATTGGCTGGACAGAACTCGCAGTCGCCGCCCGCTGAACGGTATTGTATTGG
CGTTGGATGTGTCGCACTTGGCTACGGCAACGGCATCGGAGCGTAAAGCCTACGCTAGCCTGCTGCGCGCTCGTCTGCGT
GAGCTGATGGAAACTCTTTCAACGCGTTTGCCGGTGTACATTGCACTGACCAAACTTGATCTTCTGTATGGCTTTGAACC
GTTTTTCAAACACTACACCAAGAGCCAGCGTGAAGAAGTGCTGGGCTTCACCTTCTCACTGGATTCAATTGATAACTTGG
ATCACTGGTTGGAAGAGTTTGCCAAAGAATACGCCGAGTTTGTCGAGCGGATTCATGGGGTCTTACCCCATGCGGTTTCG
GCGCCAATGTCGCTGGATGAACGCAATGCCATCTACAGTTTCACGCGCCAGATCTCCGGTTTGAAAGAAATCCTGACGCA
ATTTTTCCAAGATGCTTTGGCGAGTGATCAGTTCTCCACTTCCGCACTGGTACGTGGGGCTTACTTTACTTCGGTGTATC
AGCAAGGTGTGCCGACCAATGCGTTCGATGATGCGGCGTCGCGCCGTTACGGTTTATCGCATGCGGTCAATACTGCTCAG
CGCGCGAAAAACTCAACCATCTATTTCACCCAGAAGCTGTTCAGTAACATCATTTATCCGGAAGCTGGACTGGCGTCGGA
TAACTTTCGAATTGCGCGCCAAAAGCGCCGCTTGATTGCGTTGTCGTTTCTCACTTGTTCGATTGCGACTGTGCTGCTGG
CCGGGACTTGGCATCGTAACTACTTGGCCAACATCAAGCATTCCGATGCGGTGCTGGCGAAGGTGAATCAGTACAACGAT
CAATACCCGTCCAATGTGTATCTGGCATCGCAAAAAGATGTGCTGGAGCCGCTGAACAAAATTCGTGAAGCCACGTTAGA
GTTTGGTTTCTTCCGTGAAAAACCGCGCTTTATTTCTGATTTTGGCCTGTATCAGGGCCATACCATCGGGCCGATGGTGG
AAGCGACGTATTTGAACCTGCTGGAAAGCCGTTTTCTGCCGCTGCTGATGGCGGATGTGGTGGTTGACCTGAATCAGGCG
CAAACGGATGAAGAAAAACTGGCGGTGCTGCGCGTGTATCGCATGATGGTAGATAAAAGCGGTCGCTACAAAGATTACGT
GATGGATTACTTTGCCAAATATTGGCAGCAGGAGTTCTCAGGTCGCCGTGAAATTCAGGAAGAACTGTTGGGTCACCTCG
ATTACGCCATGCGTCATACCGATTTAGCGGGTGAGCGTGCGCGCGGCGATAAAGTCGCCAATCAGGTGATGAAGCCGTAT
GACAATACCATCGCGAATGTGCAACGTGATTTGGGGTCAATGCCAAACGATCAACGTGTTTACCGTAACCTGAAGCTGAA
TGCGCAAACGGTGCTTGGCCCGGCGATCAACCTGCGTAATCTGGTGGGGCCGGTATTTGACGTGGTGTTTGAAGAGCGCG
TGATGAACAGCAGCACGCTGTACATTCCGCAAATGCTCACCAAGCGCGGCTTTGAAGATTACTTTATGCCGCAGTCTGAA
TCGGTGTCGGAACTGGCATTGATCGACAGTTGGGTTTTAGGGCAGTCGAAGTCGGCGCAGTTCAGTGAAGCGGACAAACA
AGCGCTGCGCGATAAGATTCGAAATCTGTACGTGGCGGATTACACCAACACTTGGCGTGCGGCGTTAAATGAAATCGACA
TGAAATATTTCAGCGATATCAATGATGCCGTCACGGTGCTGGACAACCTGACGGGCAACATCGAACCGCTGCAACGTCTG
CTGCGTACACTCGACGATAACACCAAGATGTTTGCCGCCTTGCCAAAAGACGACAGCGCGCAGAAAGAGCTGCTCAAGAG
TCCCAAATATAAAGTGGCCTCGATGATCGAAGCGCCGTTCTCTGATTTGAACAACATGATCAAACCTGTTGGTGATAAGC
CTGCGTATCTTCATGAAGTGTTGGCATCGGTGGAAGAGCTGAAGAACTACCTGAAATCCATTCAGGATGCACCGGATGTT
GGCATGGCAGCGCTTGATGCGACCAAAGCGCGAGTGAAGCTCGTCAATGCAGACCCAATCTATACCTTGAAACGCATCGC
GTCTGGCCTGCCCAAACCGCTCGATACGATGGTCGCCAAACTGGCGGATGAGAGCTGGTATGTGGTGAAACAAGAGGCGA
TCAAACACCTCGAAGTGCGTTGGCATGAAGATGTCTACAAGACGTTCGAAGAGAAACTGGCGGGGCGTTATCCGTTCAAT
GCCGCATCGAAAAAAGATGCGTCACTGGAAGATTTCGAAGCTTTCTTTGCTCCGAATGGTACGCTGGATAGCTTCTACAA
CAATCAGTTGCGCATGTTCATCGAAGAGAACATCACGGTGAATAACGACGACACCTCGCAGTCGATCATTCGCAAAGACG
TGCTCAGTCAGATCAAACAGGCGCAAAAAATCCGTGAAGCCTTCTTTAACCGCAAAGGCATTTTGGATGTCAGCTTCTCA
GTTGAACCGCTGCGTTTGAGTGGCAATAAACGCCGCAGTGTATTGAATGTCGATGGTCAATATCTGGCGTATAGCCATGG
TCCGCGCGATAGCGTGGAGCTGATTTGGCCAAACACGCTACGGGACTCGGCTGTGTCGAAAGTGACGCTGGTTCCGACCC
AAACCAACATGTCACCACGCAGCATCAATATTCAGGGGCCGTGGGCATTCTTCCGCCTGCTTGACCAAGGGGACGTGGTG
GCCGCGAGTACCACGTCGGTGGATTACAAATTTGCGGTGGATGGCGGCGATATGATTTACCGCATCAACGCTGAAGCCGA
TGCCAACCCATTTACGGAACGTCTGTTCAGATCGTTCAAACTGTCTAAAACCTTGTATTAA