Detailed information of component protein
Summary
| Component ID | T6CP012521 |
| Component protein type | VasH |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (530 a.a.); Nucleotide sequence (1590 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21060 |
| Coordinate (Strand) | 1244818..1246407 (+) |
| NCBI ID | WP_004727185.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Sigma54_activat | PF00158.28 | 1.6e-67 | 193..359 |
| HTH_8 | PF02954.21 | 1.4e-07 | 484..523 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 530 a.a.
>T6CP012521 NC_016628:1244818-1246407 [Vibrio furnissii NCTC 11218] [VasH]
MSNWLAFTADLVGLRKPHQLATRFVDIIAQELGLSNAMLLMPSSDGRLLVPHDERLTYSWAVTDFDNPFAHVLQSSKAMH
LTAEELVFWQSNRTFSQLVSKVGMFDSVWIQPLPMGHRHVQSILLLIGESHVVANIFQDDAFLKFIDVFSQQWSLLHDME
REEQNRRALKESLCDIQRDSVQRVLVSDLSRKLIGDSEVMQKLREQIVSAASSNLSVMVQGETGTGKELAAEAVHDLSSR
KHAPFVAINCAAIPENLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLALQAKLLRVLESKTFRPVGGK
QELTSDFRLVSATHVNLLDQVRRKAFRQDLYYRLFQYPITLPRLASRLDDVDLLAQHFVRVFNQQHGKNIRGLHYSAIDC
LKQHDFPGNVRELKHLIEFGCAQTADGTQVEEHCFTHRIASMAMLSPAVSAHDEPIMPQATQPQHARATTGQNYSVIHDL
KQALSDFEEKIIRERLNHFSGDRAKAAQSLGIPKRTLAYKCQKLEIKAL*
MSNWLAFTADLVGLRKPHQLATRFVDIIAQELGLSNAMLLMPSSDGRLLVPHDERLTYSWAVTDFDNPFAHVLQSSKAMH
LTAEELVFWQSNRTFSQLVSKVGMFDSVWIQPLPMGHRHVQSILLLIGESHVVANIFQDDAFLKFIDVFSQQWSLLHDME
REEQNRRALKESLCDIQRDSVQRVLVSDLSRKLIGDSEVMQKLREQIVSAASSNLSVMVQGETGTGKELAAEAVHDLSSR
KHAPFVAINCAAIPENLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLALQAKLLRVLESKTFRPVGGK
QELTSDFRLVSATHVNLLDQVRRKAFRQDLYYRLFQYPITLPRLASRLDDVDLLAQHFVRVFNQQHGKNIRGLHYSAIDC
LKQHDFPGNVRELKHLIEFGCAQTADGTQVEEHCFTHRIASMAMLSPAVSAHDEPIMPQATQPQHARATTGQNYSVIHDL
KQALSDFEEKIIRERLNHFSGDRAKAAQSLGIPKRTLAYKCQKLEIKAL*
Nucleotide sequence: 1590 bp
>T6CP012521 NC_016628:1244818-1246407 [Vibrio furnissii NCTC 11218] [VasH]
ATGAGTAACTGGCTCGCGTTCACTGCCGATCTGGTGGGCCTTCGAAAGCCGCACCAGTTGGCGACCCGGTTTGTTGACAT
CATCGCGCAGGAGCTTGGGCTTTCGAACGCGATGTTGTTGATGCCCAGCTCTGATGGTCGTCTCTTGGTCCCTCATGATG
AACGCCTGACCTATTCATGGGCGGTCACCGATTTTGATAATCCGTTTGCGCATGTGCTGCAATCGTCAAAAGCCATGCAT
CTGACCGCGGAAGAGCTGGTGTTTTGGCAGTCAAACCGCACATTCAGCCAACTGGTGTCAAAAGTGGGAATGTTTGATTC
CGTGTGGATTCAACCGTTGCCGATGGGGCATCGCCATGTGCAATCGATTTTGCTGTTGATTGGCGAAAGCCATGTGGTGG
CGAACATTTTCCAAGATGATGCCTTCCTGAAATTCATCGATGTGTTCTCGCAGCAGTGGTCACTGCTGCATGACATGGAA
CGGGAAGAACAAAACCGCCGCGCGCTTAAAGAGTCGCTGTGTGACATTCAACGTGATTCCGTGCAGCGAGTATTGGTGAG
CGACCTGTCGCGCAAACTGATTGGCGACAGTGAGGTGATGCAGAAGCTGCGTGAGCAAATCGTCAGTGCAGCCAGCTCTA
ATCTGTCGGTGATGGTGCAGGGGGAAACGGGTACGGGGAAAGAACTGGCGGCTGAAGCGGTACACGATCTTTCATCACGC
AAACATGCGCCGTTTGTGGCCATCAACTGTGCCGCCATTCCCGAAAATTTACTTGAAAGTGAACTGTTTGGGTATTGCAA
AGGCGCCTTCTCGGGCGCAGACAGCGATAAGCAAGGACTGATCGCCCAAGCCAACGGTGGCACCTTGTTTCTCGATGAAA
TAGGCGATATGCCACTGGCGCTGCAAGCAAAGTTGCTGCGGGTGCTGGAGTCGAAAACCTTCCGTCCGGTCGGGGGCAAG
CAAGAACTGACATCAGACTTTCGCTTGGTGTCGGCAACGCATGTCAACTTGCTGGATCAGGTGCGTCGCAAAGCGTTTCG
TCAGGATCTTTACTATCGTCTGTTCCAGTATCCGATCACCTTGCCACGCCTTGCTTCCCGTCTGGATGATGTGGATTTGC
TGGCGCAACATTTTGTGCGTGTGTTCAATCAGCAGCACGGCAAAAACATTCGTGGCCTGCACTACAGCGCGATCGATTGC
CTCAAACAACATGATTTCCCGGGCAATGTCCGTGAACTCAAGCATCTGATTGAATTTGGCTGCGCGCAAACAGCCGATGG
CACGCAGGTTGAAGAGCACTGTTTTACGCACCGCATTGCTTCGATGGCGATGCTATCGCCAGCGGTGTCTGCTCACGATG
AGCCCATCATGCCGCAGGCGACTCAACCTCAGCACGCCCGAGCAACGACGGGACAAAACTACTCGGTGATTCACGATCTC
AAACAAGCACTGAGCGACTTTGAAGAAAAAATCATTCGCGAACGCCTCAATCACTTTTCGGGTGACCGCGCCAAAGCGGC
GCAGAGCCTTGGCATTCCGAAGCGCACCTTGGCGTACAAATGTCAGAAGCTGGAGATTAAGGCGTTATGA
ATGAGTAACTGGCTCGCGTTCACTGCCGATCTGGTGGGCCTTCGAAAGCCGCACCAGTTGGCGACCCGGTTTGTTGACAT
CATCGCGCAGGAGCTTGGGCTTTCGAACGCGATGTTGTTGATGCCCAGCTCTGATGGTCGTCTCTTGGTCCCTCATGATG
AACGCCTGACCTATTCATGGGCGGTCACCGATTTTGATAATCCGTTTGCGCATGTGCTGCAATCGTCAAAAGCCATGCAT
CTGACCGCGGAAGAGCTGGTGTTTTGGCAGTCAAACCGCACATTCAGCCAACTGGTGTCAAAAGTGGGAATGTTTGATTC
CGTGTGGATTCAACCGTTGCCGATGGGGCATCGCCATGTGCAATCGATTTTGCTGTTGATTGGCGAAAGCCATGTGGTGG
CGAACATTTTCCAAGATGATGCCTTCCTGAAATTCATCGATGTGTTCTCGCAGCAGTGGTCACTGCTGCATGACATGGAA
CGGGAAGAACAAAACCGCCGCGCGCTTAAAGAGTCGCTGTGTGACATTCAACGTGATTCCGTGCAGCGAGTATTGGTGAG
CGACCTGTCGCGCAAACTGATTGGCGACAGTGAGGTGATGCAGAAGCTGCGTGAGCAAATCGTCAGTGCAGCCAGCTCTA
ATCTGTCGGTGATGGTGCAGGGGGAAACGGGTACGGGGAAAGAACTGGCGGCTGAAGCGGTACACGATCTTTCATCACGC
AAACATGCGCCGTTTGTGGCCATCAACTGTGCCGCCATTCCCGAAAATTTACTTGAAAGTGAACTGTTTGGGTATTGCAA
AGGCGCCTTCTCGGGCGCAGACAGCGATAAGCAAGGACTGATCGCCCAAGCCAACGGTGGCACCTTGTTTCTCGATGAAA
TAGGCGATATGCCACTGGCGCTGCAAGCAAAGTTGCTGCGGGTGCTGGAGTCGAAAACCTTCCGTCCGGTCGGGGGCAAG
CAAGAACTGACATCAGACTTTCGCTTGGTGTCGGCAACGCATGTCAACTTGCTGGATCAGGTGCGTCGCAAAGCGTTTCG
TCAGGATCTTTACTATCGTCTGTTCCAGTATCCGATCACCTTGCCACGCCTTGCTTCCCGTCTGGATGATGTGGATTTGC
TGGCGCAACATTTTGTGCGTGTGTTCAATCAGCAGCACGGCAAAAACATTCGTGGCCTGCACTACAGCGCGATCGATTGC
CTCAAACAACATGATTTCCCGGGCAATGTCCGTGAACTCAAGCATCTGATTGAATTTGGCTGCGCGCAAACAGCCGATGG
CACGCAGGTTGAAGAGCACTGTTTTACGCACCGCATTGCTTCGATGGCGATGCTATCGCCAGCGGTGTCTGCTCACGATG
AGCCCATCATGCCGCAGGCGACTCAACCTCAGCACGCCCGAGCAACGACGGGACAAAACTACTCGGTGATTCACGATCTC
AAACAAGCACTGAGCGACTTTGAAGAAAAAATCATTCGCGAACGCCTCAATCACTTTTCGGGTGACCGCGCCAAAGCGGC
GCAGAGCCTTGGCATTCCGAAGCGCACCTTGGCGTACAAATGTCAGAAGCTGGAGATTAAGGCGTTATGA