Detailed information of component protein
Summary
| Component ID | T6CP005623 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00530  (Type i1) |
| Strain | Vibrio furnissii NCTC 11218 |
| Replicon | chromosome II |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFU_RS21040 |
| Coordinate (Strand) | 1239583..1240059 (+) |
| NCBI ID | WP_004727189.1 |
| RefSeq | NC_016628 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 2.1e-29 | 30..144 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 159 a.a.
>T6CP005623 NC_016628:1239583-1240059 [Vibrio furnissii NCTC 11218] [TssJ]
VNKLLFMLLSLLVLTACSSTEPYEPAKQPTKVTFSLLADDGVNPSIWGEASPVEIQVFELKDDSMFMSADYDQLKADYKK
SLRSNFVKNYDYVLMPGQFKFVNAFEVDEETNYIGVMAHFSDPEISEWKKAVKVLNKGREYHLLMFFKDYDVKLDRVE*
VNKLLFMLLSLLVLTACSSTEPYEPAKQPTKVTFSLLADDGVNPSIWGEASPVEIQVFELKDDSMFMSADYDQLKADYKK
SLRSNFVKNYDYVLMPGQFKFVNAFEVDEETNYIGVMAHFSDPEISEWKKAVKVLNKGREYHLLMFFKDYDVKLDRVE*
Nucleotide sequence: 477 bp
>T6CP005623 NC_016628:1239583-1240059 [Vibrio furnissii NCTC 11218] [TssJ]
GTGAACAAACTGCTGTTTATGCTGCTTTCGTTGCTGGTATTGACCGCTTGCAGTTCGACGGAACCGTACGAGCCAGCGAA
ACAGCCGACGAAAGTCACGTTCAGTCTGCTCGCAGATGATGGCGTCAACCCTAGTATTTGGGGGGAAGCGTCTCCGGTCG
AAATTCAGGTGTTTGAACTCAAAGATGATTCGATGTTCATGTCCGCCGACTACGACCAACTGAAAGCGGATTATAAAAAA
TCACTGCGCAGCAACTTCGTCAAAAATTACGACTACGTGCTGATGCCGGGCCAGTTCAAGTTTGTGAATGCGTTTGAAGT
GGATGAAGAAACAAACTACATCGGTGTGATGGCGCACTTTTCTGATCCGGAAATTAGTGAATGGAAAAAGGCCGTCAAAG
TGCTGAACAAAGGCAGGGAATACCACTTGCTGATGTTTTTCAAAGATTACGATGTGAAATTGGATAGGGTGGAATAA
GTGAACAAACTGCTGTTTATGCTGCTTTCGTTGCTGGTATTGACCGCTTGCAGTTCGACGGAACCGTACGAGCCAGCGAA
ACAGCCGACGAAAGTCACGTTCAGTCTGCTCGCAGATGATGGCGTCAACCCTAGTATTTGGGGGGAAGCGTCTCCGGTCG
AAATTCAGGTGTTTGAACTCAAAGATGATTCGATGTTCATGTCCGCCGACTACGACCAACTGAAAGCGGATTATAAAAAA
TCACTGCGCAGCAACTTCGTCAAAAATTACGACTACGTGCTGATGCCGGGCCAGTTCAAGTTTGTGAATGCGTTTGAAGT
GGATGAAGAAACAAACTACATCGGTGTGATGGCGCACTTTTCTGATCCGGAAATTAGTGAATGGAAAAAGGCCGTCAAAG
TGCTGAACAAAGGCAGGGAATACCACTTGCTGATGTTTTTCAAAGATTACGATGTGAAATTGGATAGGGTGGAATAA