Detailed information of component protein


Summary

Component ID T6CP008959
Component protein type TssA
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (467 a.a.); Nucleotide sequence (1401 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21070
Coordinate (Strand) 1247073..1248473 (+)
NCBI ID WP_014257999.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 5e-76 215..461
ImpA_N PF06812.14 7.7e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 467 a.a.    

>T6CP008959 NC_016628:1247073-1248473 [Vibrio furnissii NCTC 11218] [TssA]
MELTEYRRCVAQPIAGDNPVGERLIDDPLFEFIEDQMMKVGSLSHGSVQWDEVEHSALKLLQGKTKDIKLLVYLLQCLHN
QLSPSRFILSFELMSDFMASFWEASYPAPGKRGNLPRRKFFSQIAQRFSMATEKIDFNQFDAQDRQALNEAVVAWQSVIE
AQGLSSDVVEAVARSVQSELNKVEARQQAEQQQTAKPVESPRPTTTSSVLSVDNSSDKAAKQTLLKVADFLAEQEFGIAL
SIRLRRYAVWGTITTLPDHKADGETMLRGMQQDRMKDYQDQMRHADLTLWRKVEQSLTLSPYWFDGQLMSFTIAQHLGKE
SWCLAITEETQQFLARMPSLLELKFKGGEPFVSDSVKEWLASANGSTGGQSVGGDWQEKRKEAMALAKEGGIAVALSMLN
DGLVAATEPRDKFYWRMLSADLLNANHLDAMAKAQYQTLHHQVTTMQVTDWEPSLVEQLERYTTSE*

  Nucleotide sequence: 1401 bp    

>T6CP008959 NC_016628:1247073-1248473 [Vibrio furnissii NCTC 11218] [TssA]
ATGGAATTAACGGAATACCGCCGCTGTGTGGCACAGCCGATTGCCGGAGACAATCCGGTCGGCGAGCGTTTGATTGACGA
TCCTCTGTTTGAGTTTATCGAAGATCAAATGATGAAAGTTGGCTCGCTATCGCACGGCAGCGTGCAGTGGGACGAAGTGG
AACACAGTGCGCTGAAATTGCTGCAAGGCAAAACCAAAGACATCAAGCTGCTAGTGTATCTGCTGCAATGCCTGCACAAC
CAACTGTCGCCTTCCCGCTTTATTCTCTCCTTTGAGTTGATGAGCGACTTTATGGCGTCTTTCTGGGAAGCGAGTTATCC
CGCGCCGGGTAAACGCGGCAACCTGCCAAGACGCAAGTTTTTCAGTCAGATTGCACAGCGATTTTCGATGGCAACTGAAA
AAATCGATTTTAATCAGTTTGATGCGCAGGATCGCCAAGCATTGAATGAGGCAGTGGTTGCATGGCAAAGCGTCATTGAG
GCGCAGGGGCTGAGTTCGGATGTGGTCGAAGCGGTGGCTCGCTCGGTTCAGAGTGAACTCAATAAAGTCGAAGCGCGTCA
GCAAGCCGAGCAGCAGCAAACGGCCAAGCCTGTTGAGTCGCCGCGCCCGACCACGACCAGTTCAGTCTTGTCGGTAGATA
ACTCCAGTGACAAAGCGGCCAAGCAGACGCTGCTCAAAGTCGCGGATTTTCTTGCTGAGCAGGAGTTTGGCATTGCGCTG
TCGATTCGCCTGCGCCGCTACGCCGTGTGGGGGACGATTACCACGTTGCCGGATCACAAAGCCGATGGTGAAACCATGCT
GCGCGGCATGCAGCAAGACCGAATGAAAGATTATCAGGATCAGATGCGTCATGCGGATCTGACGCTTTGGCGTAAGGTCG
AGCAGAGCCTCACGCTCTCCCCGTACTGGTTTGACGGCCAACTGATGAGCTTCACCATTGCACAACACTTGGGTAAAGAG
AGCTGGTGCCTAGCCATCACAGAAGAAACGCAGCAATTTCTCGCCCGGATGCCTTCGCTGCTGGAACTCAAATTTAAGGG
GGGCGAACCGTTTGTCTCCGACAGCGTGAAGGAATGGCTGGCATCCGCCAACGGCTCGACTGGCGGGCAAAGTGTGGGCG
GTGATTGGCAGGAAAAACGCAAAGAAGCGATGGCTTTGGCAAAAGAAGGCGGCATCGCGGTCGCCTTGTCGATGCTCAAT
GACGGCCTGGTGGCAGCCACGGAGCCGCGCGACAAATTTTACTGGCGGATGCTTTCTGCCGATCTGCTCAACGCCAATCA
TCTCGATGCGATGGCGAAAGCGCAGTATCAAACCTTACATCATCAAGTCACTACCATGCAGGTTACCGATTGGGAACCAT
CGTTGGTGGAACAATTAGAACGATATACAACGTCAGAGTAA