Detailed information of component protein


Summary

Component ID T6CP005622
Component protein type TssG
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21030
Coordinate (Strand) 1237073..1238089 (+)
NCBI ID WP_086027303.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-89 29..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 339 a.a.    

>T6CP005622 NC_016628:1237073-1238089 [Vibrio furnissii NCTC 11218] [TssG]
MGNTDRNAAVDMTADGQLVPQLHLPGDVRAYNFYQLVELLQKLQQFNPESEEWERQCQLVFSANPSLGFSPSDVNSLHER
DDERLVMLTNFFGLSGAQSPLPGFIIEQLVNEEPGGFKQPFFDFFNNRLINLVYRIWRKYRYYVRFQPDAQDAFSTQLFA
LVGLGDTDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLQDVSIRQWVRRKVQIDKSQQLSLGQQNAQLGVD
SMVGESVMDCNGKFVICIGKLSRERFADFLPSGKEHQPLCKLVEFILREQMAYDVELTLDEDEAPKLSLAADSGVALGWT
SFLGDNAQDQHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP005622 NC_016628:1237073-1238089 [Vibrio furnissii NCTC 11218] [TssG]
ATGGGGAACACAGACCGGAATGCAGCCGTTGATATGACGGCTGACGGCCAGCTGGTGCCCCAATTGCACTTGCCTGGTGA
TGTACGTGCTTACAACTTTTACCAGTTGGTTGAGTTGTTGCAAAAACTGCAGCAATTCAACCCTGAATCGGAAGAGTGGG
AGCGTCAGTGTCAGTTGGTGTTTAGTGCCAACCCAAGCTTGGGGTTTTCGCCATCTGATGTGAATTCTCTGCATGAGCGT
GACGATGAACGTTTGGTGATGCTGACCAACTTTTTTGGTTTGTCTGGCGCGCAGTCGCCGCTGCCCGGGTTCATCATCGA
ACAATTGGTCAACGAAGAACCGGGCGGGTTCAAACAGCCATTTTTTGACTTTTTTAATAACCGATTGATCAACTTGGTGT
ATCGCATCTGGCGCAAATATCGTTATTACGTGCGTTTTCAGCCAGATGCGCAAGATGCGTTTTCTACCCAGTTGTTCGCG
TTGGTGGGATTGGGTGATACCGACCTGCGCGGCGAGACGCCCATCAACTGGTGCAAGATGCTGGCTTACGCCGGTACCTT
GGCAGGACGCAGCCGCTCACCGCAAGTGGTGGCTGGCATCATCGCCCACTGTTTCGATTTGCAAGACGTGAGCATTCGCC
AGTGGGTGCGCCGCAAGGTGCAGATCGACAAATCCCAGCAACTGTCGCTGGGACAACAGAATGCCCAACTGGGCGTTGAC
AGCATGGTGGGTGAATCGGTGATGGACTGCAACGGTAAGTTCGTCATATGCATTGGAAAGTTGTCGCGCGAGCGTTTCGC
CGATTTTCTTCCTTCCGGTAAGGAACACCAACCGCTGTGCAAATTAGTGGAATTTATTTTGCGTGAGCAGATGGCCTACG
ACGTCGAGCTGACCCTGGATGAAGATGAAGCGCCCAAATTGAGCTTGGCGGCCGATAGTGGCGTAGCTCTGGGATGGACT
TCGTTTCTGGGAGACAACGCGCAAGACCAACACGTTCTGATTCAAGTGAGGCAATAA