Detailed information of component protein


Summary

Component ID T6CP011967
Component protein type PAAR
T6SS ID (Type) T6SS00530 insolico (Type i1)
Strain Vibrio furnissii NCTC 11218
Replicon chromosome II
Sequence Protein sequence (95 a.a.); Nucleotide sequence (285 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFU_RS21000
Coordinate (Strand) 1231183..1231467 (+)
NCBI ID WP_004727197.1
RefSeq NC_016628
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 8.5e-18 19..85
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 95 a.a.    

>T6CP011967 NC_016628:1231183-1231467 [Vibrio furnissii NCTC 11218] [PAAR]
MGNGIVVGHIGTAHDGFPPTPVTAGSGSVKIDGIPAARQGDPLAPHDKPKNPSHPRSIAAGSSSVMIDGKPAARAGDAVD
CGGVLQGGSSVNIG*

  Nucleotide sequence: 285 bp    

>T6CP011967 NC_016628:1231183-1231467 [Vibrio furnissii NCTC 11218] [PAAR]
ATGGGAAATGGTATTGTTGTTGGGCATATAGGGACAGCGCATGATGGATTCCCACCGACGCCGGTCACCGCAGGTTCGGG
CTCGGTTAAAATCGATGGGATTCCCGCGGCCCGTCAAGGCGATCCGCTGGCTCCGCATGATAAACCTAAAAATCCTTCTC
ATCCGCGCAGTATTGCCGCGGGCTCTTCAAGTGTCATGATTGATGGCAAACCAGCCGCAAGAGCGGGTGATGCAGTTGAC
TGTGGTGGCGTGTTGCAAGGTGGTAGCAGTGTCAACATTGGTTAA