Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00077  |
| T6SS type | Type i4b |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon (RefSeq) | chromosome I (NC_006350) |
| Location | 3697190..3717176 |
| Function | - |
| Comment | - |
| References | [1] Burtnick MN et al (2011) The cluster 1 type VI secretion system is a major virulence determinant in Burkholderia pseudomallei. Infect Immun. 79(4):1512-25. [PudMed:21300775] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BPS_RS16670 | 3693290..3694738 | + | 1449 | WP_009938786.1 | TolC family type I secretion outer membrane protein | ||
| BPS_RS16675 | 3694948..3695934 | - | 987 | WP_004555447.1 | hypothetical protein | ||
| BPS_RS16680 | 3696060..3696911 | + | 852 | WP_004199998.1 | M15 family metallopeptidase | ||
| T6CP000613 | TssM | BPS_RS16690 (tssM) | 3697190..3701083 | + | 3894 | WP_004555848.1 | type VI secretion system membrane subunit TssM |
| BPS_RS16695 (tagF) | 3701080..3702069 | + | 990 | WP_004200003.1 | type VI secretion system-associated protein TagF | ||
| T6CP011469 | TagL | BPS_RS16700 | 3702074..3703006 | + | 933 | WP_011205261.1 | OmpA family protein |
| T6CP000614 | TssA | BPS_RS16705 (tssA) | 3703205..3704326 | - | 1122 | WP_004549922.1 | type VI secretion system protein TssA |
| T6CP000615 | TssH | BPS_RS16710 (tssH) | 3704416..3707085 | - | 2670 | WP_004549921.1 | type VI secretion system ATPase TssH |
| T6CP000616 | TssG | BPS_RS16715 (tssG) | 3707119..3708219 | - | 1101 | WP_004200010.1 | type VI secretion system baseplate subunit TssG |
| T6CP000617 | TssF | BPS_RS16720 (tssF) | 3708183..3710021 | - | 1839 | WP_004527836.1 | type VI secretion system baseplate subunit TssF |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||