Detailed information of component protein


Summary

Component ID T6CP011469
Component protein type TagL
T6SS ID (Type) T6SS00077 insolico (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (311 a.a.); Nucleotide sequence (933 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS16700
Coordinate (Strand) 3702074..3703006 (+)
NCBI ID WP_011205261.1
RefSeq NC_006350
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
OmpAPF00691.229.2e-23208..302
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
No matching records found


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
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  Protein sequence: 311 a.a.    

>T6CP011469 NC_006350:3702074-3703006 [Burkholderia pseudomallei K96243] [TagL]
MTKPRLPLLRARRFALAFAALALGGAARADNVGPATVTAIDAGGVPVKSVPLAAPVTAAPVAATAGAGATVSSPPPANAT
PGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEV
HNEAQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEI
IGHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRARNRRIEFRAGQ*

  Nucleotide sequence: 933 bp    

>T6CP011469 NC_006350:3702074-3703006 [Burkholderia pseudomallei K96243] [TagL]
ATGACGAAGCCCCGCCTGCCCCTGCTGCGCGCCCGCCGCTTCGCGCTCGCGTTCGCCGCGCTCGCGCTCGGCGGCGCCGC
GCGCGCCGACAACGTCGGCCCCGCCACCGTCACGGCGATTGACGCAGGCGGCGTGCCCGTGAAATCGGTGCCGCTCGCCG
CGCCCGTGACGGCCGCGCCGGTCGCCGCGACGGCCGGCGCGGGCGCGACCGTGTCGTCGCCGCCGCCCGCGAACGCGACG
CCGGGCCAGGTCGTCGCCGGCGGCAAGGTTGCCGACGAAGCGACGAAGGCCGCCGTGCTGCAGCGCCTGCGCGACACGTA
CGGCGCCGCGAACGTCGTCGACCAGATCGAAATCGGCAACGTCGCGACGCCGCCGAACTGGTCCGCGAACGTCCAGAAGC
TGATCGGCCCGCAACTGAAACAGATCAGCAAAGGACAGCTGAAGATCGACGGCACGCAGATCGACGTGAAGGGCGAAGTG
CACAACGAGGCGCAGCGCCAGCAGCTCGCGAGCGACATGGCGAACGCGCTGAATCCGACCTACACGATCAAGAACGGGCT
GCGCGTGAGCGCGTCCGAGCAGGGCCTGCTCGACCAGACGCTCGCGAACCGCACGATCGAATTCGAAACCGGCAGCGCGA
CGCTCACGCCGCAAGGCCGCGCGATTCTCGACCAGATGGCGGGCGCGCTCGCGAAGATGTCGAACCGAACGGTCGAGATC
ATCGGGCACACCGACAACTCGGGCAACCGCACGTCGAACATCGCGCTCAGCCAGGCGCGCGCGGATGCGGTCAAGGGATA
TCTGGTGACGAAGGGCATCGCGTCGCAGCAACTGACGACGACGGGCGTCGGCCCCGATCAGCCGATCGCGCCGAACGATT
CGGCCGACGGTCGCGCACGCAATCGCCGGATCGAATTCCGCGCGGGACAGTAA