Detailed information of regulator


Summary

Regulator ID REG0134 experimental
Regulator type protein
Regulatory pathway (from literatures) BsaN regulon
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00077 insolico (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome
Sequence Protein sequence (222 a.a.); Nucleotide sequence (666 bp)
Description Activation of BsaN regulated T6SS1(BPSS1497/tssB,BPSS1498/hcp) as analyzed by RNAseq.
Reference
External database links

Locus tag (Gene) BPSS1546 (BsaN)
Coordinates (Strand) 2100565..2101230 (-)
NCBI ID 490660320
RefSeq NC_006351
Uniprot ID UPI00014F9A73
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Target
Regulation (↓/↑)
Target sequence
BPSS1495 (virA) promotor↓GCTAAGATCGATTGATGTCCGAAACAAAGACGGTTTAGTATTCGCCGA The sequence motif for the BsaN box as indicated in red
Showing 1 to 1 of 1 rows
Pfam domain hit(s) of regulator

Loading, please wait
Domain
Pfam ID
E-value
Aligned region
HTH_18PF12833.95e-17141..220
Showing 1 to 1 of 1 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Loading, please wait
Prediction                
Region    
Sequence
Outside1-221VTEIAKLDVSFGAMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFLESCGAPDGAGREYRAGAPDGAVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQESYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQALGRGLKRELRQWRAAQAVLEVVESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Loading, please wait
Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9855--


  Protein sequence of regulator: 222 a.a.    .

>REG0134 NC_006351:c2101230-2100565 [Burkholderia pseudomallei K96243]
VTEIAKLDVSFGAMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFLESCGAPDGAGREYRAGAPDG
AVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQESYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQAL
GRGLKRELRQWRAAQAVLEVVESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT*

  Nucleotide sequence of regulator: 666 bp    .

>REG0134 NC_006351:c2101230-2100565 [Burkholderia pseudomallei K96243]
GTGACGGAAATCGCGAAACTGGACGTGTCGTTCGGCGCGATGTCCCATGCCGTTTCGATCGACAAGAATAAATCGGCGCT
GGTTATCGGCATCGGTCAATTCAAAATCGCGTCGCGTGAAGGCGCATGGCGTTTTCATGACGTGCCGTTATTCGAGGCGG
CGAAATTGCTCGCTTTTCTGGAAAGCTGCGGCGCGCCGGACGGCGCCGGCCGCGAATATCGCGCGGGGGCGCCGGACGGC
GCGGTGATCGACGCGCCCGGCGATCTGAGCATCTGGAAATTCGACCGCTGGCTGATCGCCCGCGTGATGGGCGCGCCGCA
CGGCGCCGATCCGCTGTTCGCGTTCCTGCGCGCGCAGGAGAGCTACGGGCTCGTGCGCTTCTTGCTGCGCGAGCGTGCGA
ACCCGCAGCCGATCGCCGCGCTTGCCGCGCGCTACGGCGTGTCGGAGCCGCACTTTCGCCGGCTGTGCCGGCAGGCGCTC
GGCCGCGGCCTGAAGCGCGAGCTTCGGCAATGGCGCGCCGCGCAGGCGGTGCTCGAGGTGGTCGAGAGCCGCGACAGCAT
GACCGAGGTCGCGATGAGCAACGGCTTCGCGTCTTCGTCCCACTTCTCGCGGGAAATCAAGGACTTGTTCGGCATTTCGC
CGTGCCGGTTCCGTCGCCGGACATGA