Detailed information of component protein


Summary

Component ID T6CP000615
Component protein type TssH
T6SS ID (Type) T6SS00077 insolico (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (890 a.a.); Nucleotide sequence (2670 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS16710
Coordinate (Strand) 3704416..3707085 (-)
NCBI ID WP_004549921.1
RefSeq NC_006350
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.5e-42 619..788
AAA_lid_9 PF17871.3 3e-28 374..468
ClpB_D2-small PF10431.11 2.6e-11 794..869
Clp_N PF02861.22 8.7e-11 29..74
AAA PF00004.31 1.7e-09 232..344
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 890 a.a.    

>T6CP000615 NC_006350:c3707085-3704416 [Burkholderia pseudomallei K96243] [TssH]
MSTPLKTLIAKLNPVCRKAAERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASGVDPHALRADLERELERLKTG
NTRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLALLTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAE
PRHADADVAVPDGAAASGDAPRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARD
ADLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALRARQGNQPMVPLQVDGHVVAE
IVASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALGAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADVLYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPAFLGRMKVIPYYPISDDVLAE
IIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAE
TGEFEYTVE*

  Nucleotide sequence: 2670 bp    

>T6CP000615 NC_006350:c3707085-3704416 [Burkholderia pseudomallei K96243] [TssH]
ATGAGCACGCCCCTGAAGACCCTGATCGCGAAACTGAACCCGGTGTGCCGCAAGGCCGCCGAGCGCGCCGCCAGCCACTG
CTTCGCGCGCGGTCACTACGAAGTGGATCTCGAGCATCTGTTTCTCGCGCTGCTCGACGAGTCGACCGGTGACGTGCCGC
TCGTGCTGCGCGCGAGCGGCGTCGATCCGCACGCGCTGCGCGCGGATCTCGAGCGCGAGCTCGAAAGACTGAAAACGGGC
AACACGCGCACGCCGGTGTTTTCGGTGCATCTGAGCGAGCTGTTCGAGCAGGCGTGGCTCATCGCGTCGCTCGATTCGCA
GATCGGACGGATCCGCTCGGGGCACCTGCTGCTCGCGCTGCTGACCGGGCCGGACCTCGCGCAGTTCGCGCAGCGGATGT
CGTCGCAGTTCGCGCGCGTGCGCGTCGATGACCTGAAGCACAAGTTCGACGAGATCGCCGCGGGTTCGAGCGAGGCCGAG
CCGCGGCACGCGGACGCCGACGTCGCGGTGCCCGACGGCGCCGCCGCTTCGGGCGATGCGCCGCGCGGCCCGTCGAAGAC
GCCGGCGCTCGACACGTACACGACGAACCTCACGCAGCGCGCGCGCGAGGGCAAGATCGACCCGGTGATCGGCCGCGATG
CGGAGATCCGCCAGGCGATCGACATCCTGATGCGCCGCCGGCAGAACAATCCGATCATGACGGGCGAGGCGGGCGTGGGC
AAGACGGCCGTCGTCGAAGGGCTCGCGCTGCGCATCGCGGCCGACGACGTGCCGCCGCCGCTTCGCGGCGTCGCGCTGCA
CGTGCTGGACATGGGCCTCCTGCAGGCGGGCGCGAGCGTGAAGGGCGAGTTCGAGAATCGCCTGAAGAGCGTGATCGACG
AGGTGAAAAAGAGCGCGCATCCGATCATTCTCTTCATCGACGAGGCGCACACGATCATCGGCGCGGGCGGGCAGGCGGGC
CAGAACGATGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACGATCGCGGCGACGACGTGGAGCGA
GTACAAGAAGTATTTCGAAAAGGACGCGGCGCTTGCGCGGCGCTTCCAGGTGGTGAAGATCGAGGAGCCGAGCGAGCCGC
TCGCCGCCGCGATGCTGCGCGGGATGGCGGCGCTGATGGAGCGGCACTTCAACGTGCGCGTTCTCGACGACGCGATCACC
GAGGCGGTGCGGCTGTCGCATCGCTATATCAGCGGCCGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTG
CGCGAAGGTCGCGCTCGCGCACAGCTCGACGCCCGCGGCGATCGACGACGCGAAAAAACGCATCGAGCGGATCGACGCGG
AAATCGCGGCACTCGAGCGCGAGGCCGCGAGCGGCGCCGCGCACGATGCGCGCCTCGCCGAACTGCGCGAGGCCCGCGAC
GCCGATCTGAAGGCGCTGGCCGAGGACGCCGCGCGCTACGAGGAGGAGCGCGCGCTCGTGACCGAAATCGGCGCGCTGCG
CGCCGAGCTCGATGCCGCACGCGAGTCGTCCGCCGACGGCAAGCCCGTCGATGTCGACGCGACGCGCGCGAAGCTTGCCG
AGCGCGTCGATGCGTTGCGCGCGCGGCAGGGCAACCAGCCGATGGTGCCGTTGCAGGTCGACGGCCACGTCGTCGCGGAG
ATCGTCGCGTCGTGGACGGGCATTCCGCTCGGCAGGATGGTGAAGGACGAGATCGAGACCGTGCTGAACCTGCGCGATCT
GCTCGGCGCGCGCGTGATCGGCCAGGACCATGCGCTCGGCGCGATCGCGCAGCGCGTGCGCACCGCGACCGCGAACCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACCGCGCTCGCGCTC
GCCGACGTGCTGTACGGCGGCGAGCGCAAGCTGATCACGATCAACATGAGCGAGTATCAGGAGGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCCGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACGGAGGCGGTGCGTCGCAATCCGTATT
CGGTCGTGTTGCTCGACGAAGTCGAGAAGGCGCATCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCGCG
ATGGACGATGCCGAAGGCCGTGAGATCGACTTTCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGTCGGCGGT
GATGCAGGCGTGCCTGAACAAGGCGCCGCAGGAGTTGCCCGATGCCGAGACGCTTGCCGAGACGCTGCGCCCGCAGCTCT
ACAAGACCTTCAAGCCCGCGTTCCTCGGCCGGATGAAGGTGATTCCGTACTATCCGATCTCCGACGACGTGCTCGCCGAG
ATCATCGAGCTGAAGCTCGAACGGATTCGCCGCCGGATCGAAGCGAACCACAAGGCGGCGTTCGAGTGGGACGAGTCGCT
CGTCGACGCCGTGCTCGCGCGCTGCACCGAAGTCGATTCGGGCGCGCGCAACGTCGATCACATCCTGAACGGCACGCTGC
TGCCGGAGATCGCCGAGCTCGTGCTGTCGCGCATCGCCGATGGCGAGGCGATCGTGCGGATCGCCGCGCGCGCGGCCGAG
ACGGGCGAATTCGAGTACACGGTCGAGTAA