Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABDZ24_RS11930 Genome accession   NZ_CP155623
Coordinates   2197105..2197530 (+) Length   141 a.a.
NCBI ID   WP_001115376.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192105..2202530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS11905 (ABDZ24_11935) - 2192554..2193465 (+) 912 WP_097844223.1 helix-turn-helix domain-containing protein -
  ABDZ24_RS11910 (ABDZ24_11940) pgsA 2193529..2194107 (+) 579 WP_001052972.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABDZ24_RS11915 (ABDZ24_11945) cinA 2194128..2195366 (+) 1239 WP_000990730.1 competence/damage-inducible protein CinA Machinery gene
  ABDZ24_RS11920 (ABDZ24_11950) recA 2195510..2196118 (+) 609 Protein_2193 recombinase RecA -
  ABDZ24_RS11925 (ABDZ24_11955) - 2196216..2196839 (+) 624 WP_346817884.1 topoisomerase I -
  ABDZ24_RS11930 (ABDZ24_11960) recA 2197105..2197530 (+) 426 WP_001115376.1 recombinase RecA Machinery gene
  ABDZ24_RS11935 (ABDZ24_11965) rny 2198012..2199574 (+) 1563 WP_000099773.1 ribonuclease Y -
  ABDZ24_RS11940 (ABDZ24_11970) - 2199729..2200523 (+) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  ABDZ24_RS11945 (ABDZ24_11975) spoVS 2200672..2200932 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  ABDZ24_RS11950 (ABDZ24_11980) - 2200991..2201914 (+) 924 WP_000688021.1 dipeptidase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15918.72 Da        Isoelectric Point: 4.6809

>NTDB_id=998136 ABDZ24_RS11930 WP_001115376.1 2197105..2197530(+) (recA) [Bacillus paramobilis strain N24509]
MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV
QKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRDHHGIGEDSGVEDAEDSNLQD

Nucleotide


Download         Length: 426 bp        

>NTDB_id=998136 ABDZ24_RS11930 WP_001115376.1 2197105..2197530(+) (recA) [Bacillus paramobilis strain N24509]
GTGCCAGAAACAACTCCAGGTGGTCGTGCGTTGAAATTCTATTCAACAGTTCGTCTTGAAGTACGTCGTGCGGAGCAATT
AAAGCAAGGTAACGATATCGTTGGTAATAAAACGAAAGTAAAAGTAGTTAAGAATAAAGTAGCACCACCATTCCGTGTTG
CTGAAGTTGATATTATGTACGGAGAAGGTATTTCAAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTT
CAAAAGAGTGGTGCTTGGTACTCTTATAATGAAGAGCGTTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGA
GAATACGGATTTAAGAGAGGAAATTGCCTTCTTTGTTCGTGATCATCACGGAATTGGTGAAGACTCTGGTGTGGAAGACG
CGGAAGATTCAAATCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.692

92.199

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

65.873

89.362

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.481

95.745

0.589
  recA Ralstonia pseudosolanacearum GMI1000

60

95.745

0.574
  recA Streptococcus pneumoniae D39

56.028

100

0.56
  recA Streptococcus pneumoniae Rx1

56.028

100

0.56
  recA Streptococcus pneumoniae R6

56.028

100

0.56
  recA Streptococcus pneumoniae TIGR4

56.028

100

0.56
  recA Streptococcus mutans UA159

55.714

99.291

0.553
  recA Streptococcus pyogenes NZ131

60.63

90.071

0.546
  recA Lactococcus lactis subsp. cremoris KW2

56.716

95.035

0.539
  recA Streptococcus mitis SK321

58.594

90.78

0.532
  recA Streptococcus mitis NCTC 12261

58.594

90.78

0.532
  recA Helicobacter pylori strain NCTC11637

59.055

90.071

0.532
  recA Helicobacter pylori 26695

59.055

90.071

0.532
  recA Neisseria gonorrhoeae MS11

57.258

87.943

0.504
  recA Neisseria gonorrhoeae MS11

57.258

87.943

0.504
  recA Neisseria gonorrhoeae strain FA1090

57.258

87.943

0.504
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56

88.652

0.496
  recA Acinetobacter baumannii D1279779

49.645

100

0.496
  recA Glaesserella parasuis strain SC1401

50

97.872

0.489
  recA Acinetobacter baylyi ADP1

52.893

85.816

0.454
  recA Pseudomonas stutzeri DSM 10701

55.263

80.851

0.447
  recA Vibrio cholerae O1 biovar El Tor strain E7946

52.632

80.851

0.426
  recA Vibrio cholerae strain A1552

52.632

80.851

0.426
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.826

81.56

0.39

Multiple sequence alignment