Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABDZ24_RS11915 Genome accession   NZ_CP155623
Coordinates   2194128..2195366 (+) Length   412 a.a.
NCBI ID   WP_000990730.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2189128..2200366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS11885 (ABDZ24_11915) - 2189180..2190466 (+) 1287 WP_000411986.1 pitrilysin family protein -
  ABDZ24_RS11890 (ABDZ24_11920) - 2190570..2191283 (+) 714 WP_000759594.1 SDR family oxidoreductase -
  ABDZ24_RS11895 (ABDZ24_11925) - 2191359..2191607 (+) 249 WP_000114455.1 DUF3243 domain-containing protein -
  ABDZ24_RS11900 (ABDZ24_11930) - 2191747..2192532 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ABDZ24_RS11905 (ABDZ24_11935) - 2192554..2193465 (+) 912 WP_097844223.1 helix-turn-helix domain-containing protein -
  ABDZ24_RS11910 (ABDZ24_11940) pgsA 2193529..2194107 (+) 579 WP_001052972.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABDZ24_RS11915 (ABDZ24_11945) cinA 2194128..2195366 (+) 1239 WP_000990730.1 competence/damage-inducible protein CinA Machinery gene
  ABDZ24_RS11920 (ABDZ24_11950) recA 2195510..2196118 (+) 609 Protein_2193 recombinase RecA -
  ABDZ24_RS11925 (ABDZ24_11955) - 2196216..2196839 (+) 624 WP_346817884.1 topoisomerase I -
  ABDZ24_RS11930 (ABDZ24_11960) recA 2197105..2197530 (+) 426 WP_001115376.1 recombinase RecA Machinery gene
  ABDZ24_RS11935 (ABDZ24_11965) rny 2198012..2199574 (+) 1563 WP_000099773.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45045.27 Da        Isoelectric Point: 5.4716

>NTDB_id=998135 ABDZ24_RS11915 WP_000990730.1 2194128..2195366(+) (cinA) [Bacillus paramobilis strain N24509]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
ISSSLGGELVYDEQALASISEYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHDKAIGLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEGV
LSTDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFSLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=998135 ABDZ24_RS11915 WP_000990730.1 2194128..2195366(+) (cinA) [Bacillus paramobilis strain N24509]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTACAGCAGGCAATTG
AAGTTGCGGAAGAACGTGCTGACATGCTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGTTTGGGTGGAGAGCTAGTGTATGATGAACAGGCATTAGCATCGATAAGCGAATACTTTAAGCGTACAGG
TCGCGAGTTCACAGAGAATAATAAAAAGCAGGCGCTCGTTTTGAATGGAGCAACTGTATTTGCGAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGGAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
ATAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCTACAATCGCCCCACTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCGGCGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGATAAGGCGATAGGGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACCGGTGGTCTTTTTGGCAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGTGGTGTCATTTGTTATCATAATGATGTGAAGCAGCATGTTTTACATGTACCTGAGGGAGTG
TTATCTACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGGTTTATTAAAAGCAGATAT
CGGAATTAGCTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACGGTATTTGTTGGATTGGCGA
TGAAGGATGAACCAACTGTAGTCTTTTCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment